FMO07849.5prime Sequence
1096 bp (942 high quality bases) assembled on 2009-08-11
> FMO07849.5prime
CAGTCGACATGTCATCGAAGCAACGTCTGATGGATTTCAGTCAGGTTCTG
GATAAGTGTGGAAACTATGGCAGGTTCCAGGTGATGATCCTTTTGCTGTA
CGGCTACACAAATATTCTTGGATCACTGCACTACTTTTCGCAGACCCTTA
TCACCTTCACACCAGAGCATTGGTGCTTCCATGCTGACCTTAATGGTCTC
AGTGTTGAAGGGATTCGCTCGGTATATGAAAACATATCCGCCTCATCCTG
CACGCCCCTTTTGGGCGTAGTCAACGGCACAGGTGTTGTATCTACGAACC
GAAAGTGCAGGAATTGGATTTTTAACAGGGAGAGCGGCTACGAAAGCATT
ACCACCGAGCTCAAATGGGTTTGTGACAAATCGCATCATCCAGCAGTGGG
CCAATCCTTCTTCTTCATGGGCTCAGTCGTGGGCACCATAATCTTTGGCT
ATCTGTCGGATCAAGTAGGTCGTCTGCCTTCCCTGCTGATGGCCACCTTG
TGTGGTGCAACTGGGGATTTTATCACCTCCTTTGTGCACACGCTGCCCTG
GTTCGCCTTTTCCAGATTTATGTCAGGGCTATCCACTGATACCATGTACT
ACCTAATGTACATATTGGTCTTTGAGTACTTAAGCCCCAAGAGCCGTACC
TTTGGCCTCAACATCATCTTGGCTGTATTCTACTGTTTTGGACTGATGAC
CTCGCCCTGGGCCGCCATTTGGATTGGTAATTGGCGACGCTACCTTTGGC
TGGCATCTCTTCCAGCACTGGGTGTCCTTATATATCCATTCCTGATCTGC
GAAAGTGCTCAGTGGCTTTTGACCAAAGGAAGTACGACGATGCGGTGATT
TGTCTAAAGAAAGTGGCCCAGTTCAATACGCGACATGTGGAGGAGTCCGT
TTTCGATGAGTTTGTCAAATACTATTCGGGAAAGGAACTTCAGGATTACA
GCTTAATAGTCACGAGGACCTTTCTAGCCATGTTTTGACCCCTCGATGCG
TCATCACTTGAAATTGCTCGTGAGTCGATCATATAACCTCTCATGCAAGG
GATTAACGAATATGAAGCTTAGCACTTCGCCCTTAAGCTCTCTTCC
FMO07849.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:38:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7333-RB | 1698 | CG7333-RB | 19..1120 | 9..1091 | 4875 | 97.3 | Plus |
| CG16727-RA | 2014 | CG16727-RA | 416..1001 | 328..912 | 1345 | 82.1 | Plus |
| CG17752-RA | 1716 | CG17752-RA | 585..749 | 602..766 | 315 | 80.1 | Plus |
| CG16727-RA | 2014 | CG16727-RA | 190..286 | 99..196 | 210 | 81.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:38:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19601445..19601798 | 618..969 | 1580 | 97.7 | Plus |
| 3R | 32079331 | 3R | 19601125..19601385 | 358..618 | 1305 | 100 | Plus |
| 3R | 32079331 | 3R | 19600880..19601067 | 172..359 | 940 | 100 | Plus |
| 3R | 32079331 | 3R | 19600653..19600819 | 9..175 | 835 | 100 | Plus |
| 3R | 32079331 | 3R | 19614354..19614649 | 618..912 | 710 | 83.4 | Plus |
| 3R | 32079331 | 3R | 19614006..19614296 | 328..618 | 615 | 80.8 | Plus |
| 3R | 32079331 | 3R | 19613570..19613645 | 99..174 | 185 | 82.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:38:17 has no hits.
FMO07849.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:04 Download gff for
FMO07849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7333-RB | 19..1027 | 9..1009 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:50 Download gff for
FMO07849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7333-RB | 19..1027 | 9..1009 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:06 Download gff for
FMO07849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7333-RB | 19..1027 | 9..1009 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:06 Download gff for
FMO07849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19600653..19600816 | 9..172 | 100 | -> | Plus |
| 3R | 19600881..19601067 | 173..359 | 100 | -> | Plus |
| 3R | 19601127..19601385 | 360..618 | 100 | -> | Plus |
| 3R | 19601446..19601827 | 619..995 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:50 Download gff for
FMO07849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15426375..15426538 | 9..172 | 100 | -> | Plus |
| arm_3R | 15426603..15426789 | 173..359 | 100 | -> | Plus |
| arm_3R | 15426849..15427107 | 360..618 | 100 | -> | Plus |
| arm_3R | 15427168..15427549 | 619..995 | 97 | == | Plus |
