FMO07850.5prime Sequence
1167 bp (1008 high quality bases) assembled on 2009-08-11
> FMO07850.5prime
CAGTCGACATGAGGCAAGTGACACGCGCATCGTCGGGTCAAAGTCAGGCC
CTCCTTTCATGCCTCATTATCGCCGTGTGCGCCGCATTAATAATTCAATC
TGGGCATATCCAGGGTGTGAAAGCTCAGCCGGGACGCGAACCCGGCGAGG
TGAATTCGCGGCAGCCCGGCAACGGAAATGGGACCACTGGCCACCGCGTG
CCGCGCAGTGTGTTCCACGTGCGCTGGAACCCCAACGAGAAGTTCATCGT
GGAGAGTCGCGAGAATCCGGCCATCAACTCGTCCAAGCTGGCTCCGCATC
CCCGACTCAAGGTCTCGAAGAACACCAAGCTCACGCTGAGCCCCAAGCTG
TATCTCTGCCACGACAAGCACTCGGAGCTGTGCCACAACAAGACCCAGCA
GTTTCGCCAGCGCATTGTCCGGGCCTTCGAGAAGGCCATGGTGGAGTCGG
TAAACGAGTCGCAGGCGAACCACTACAACGTGGACTACAAGCCCGTCTTT
GGGGACAGCTTCGAGGAGCAGTACTACCCCTCGACCTGCCTGGTCATGGA
GGCGGGCGTGCGGGTCCTGCGCCGCAAGGACGCGCCCTTCAACAAACTGC
CCTTCGGCCGGCTCTTTCCGCGTCAAAAGCTCTTCCGCAACGTCAAAGAC
ATCAAGACCTGCGCCATCGTCTCCAGTGCGGGATCCTTGGCTGGCTCCAA
GTTAGGCCGCTTCATTGACACGCACGACATTGTGATGAGATTCAATCATG
CGCCCACGCAAGGACACGAGGTGGATGTTGGCAGCAAAACCACGATCCGT
GTGGTGAATTCGCAAGTGGTCACCAAGCCGGAATTCGACTTCACCCGAGC
CCCCATCTTCCGGAACGTCACGATCGCCGCCTGGATCCGGGCAAGTACAA
TGGCACACTGGAGGATTGGCTCACTAGCGCTGACTACGACCTCTTTTTCA
ACTACGAGCTGTAAAGGGGCGCTATCCGAAGTCACGTGCCTTCCTCATCA
ATCCCCACTTCGTGTTGGCGCCTGTGGCAAAGTCTGCAGAAGTTTGGCCG
GAAAACGGGCCGATAACAAAATTCCCCAAGTTCGGGTTTATAGACTGACT
GCCTCTGCCGCACTGTCCCCAGGTGGAACTTCATGGAATACGTGCGTCCC
ACCGAACTCAATGGAAC
FMO07850.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ST6Gal-RA | 1609 | CG4871-RA | 134..1294 | 9..1165 | 5220 | 97.3 | Plus |
| ST6Gal-RB | 2229 | CG4871-RB | 919..1914 | 174..1165 | 4395 | 96.9 | Plus |
| ST6Gal-RB | 2229 | CG4871-RB | 685..851 | 9..175 | 835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24692675..24693218 | 717..174 | 2720 | 100 | Minus |
| 2R | 25286936 | 2R | 24692029..24692260 | 1046..816 | 925 | 96.1 | Minus |
| 2R | 25286936 | 2R | 24693286..24693452 | 175..9 | 835 | 100 | Minus |
| 2R | 25286936 | 2R | 24692321..24692421 | 817..717 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:08:55 has no hits.
FMO07850.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:03 Download gff for
FMO07850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ST6Gal-RA | 88..1129 | 1..1040 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:53 Download gff for
FMO07850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ST6Gal-RA | 125..1166 | 1..1040 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:43 Download gff for
FMO07850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ST6Gal-RA | 125..1166 | 1..1040 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:43 Download gff for
FMO07850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24692035..24692260 | 816..1040 | 96 | <- | Minus |
| 2R | 24692323..24692420 | 718..815 | 100 | <- | Minus |
| 2R | 24692675..24693217 | 175..717 | 100 | <- | Minus |
| 2R | 24693287..24693460 | 1..174 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:53 Download gff for
FMO07850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20580810..20580983 | 1..174 | 97 | | Minus |
| arm_2R | 20579558..20579783 | 816..1040 | 96 | <- | Minus |
| arm_2R | 20579846..20579943 | 718..815 | 100 | <- | Minus |
| arm_2R | 20580198..20580740 | 175..717 | 100 | <- | Minus |
