FMO07852.5prime Sequence
991 bp (991 high quality bases) assembled on 2009-08-11
> FMO07852.5prime
CAGTCGACATGTCCAAGCCAGTACCAATGAGTCCGTCCTTTGTGGACGAG
GATCTGCACAACCTGAGGAAGCCCAAACCGTTCAAATTGGGCCAGTTCTT
ATATAACACCGAGGATGGAACGGTTATGGGTCGCGATCGATCGTCATGGG
CCAAAATCGGAATCTTCTATGTGGCCTTCTACGGAGTCCTAGCCGCCCTC
GTTGCCATCTGCATGTGGGCCTTCTTCCAAACTCTCGATCCTCGCATTCC
CAAGTGGACCCTGGACCGTTCCCTGATAGGTACAAATCCAGGTCTAGGTT
TTCGACCCCTGCCACCGGTGGACAATGTGGAAAGCACTTTGATCTGGTAC
AAGGGCACCCAACACGAGAACTACAAGCACTGGACAGACTCCCTGGATGA
TTTCCTTGCGGTGTACAAAGTACCTGGTCTAACACCCGGCCGTGGTCAGA
ACATCTACAACTGCGACTACAACCAGCCGCCGCCAAAGGGTCAGGTGTGC
GACGTGGACATCAAGACGTGGTCGCCGTGCACCAAGGAGAATAACTACAG
CTACCACAAGAGTGCGCCGTGTATCTTCCTCAAGCTGAACAAGATCTACG
GCTGGATTCCGGAGTACTACAACAGATCGAATGACTTGCCCGCGAACATG
CCCGCCAGCTTGAAGACCTACATCGCAGAGGTCGAGAAGACGCAGCCAGA
AAAGCTAAACACCATTTGGGTATCGTGCGAGGGCGAGAACCCAGCCGACC
AGGAGAACATTGGTGCTGTCAACTACCTGCCAATCAGGGGATTCCCCGGC
TACTTCTATCCCTACCAGAACTCCGAGGGCTACTTGAGTCCCCTGGTGGC
GGTGCACTTCCAGCGCCCCAAACGCGGAATCATCATCAACGTGGAGTGCA
GGGCTTGGGCTCGCAACATCATACACGATCGCAAGGAGAGAATCGGATCG
GTGCACTATGAGCTCCTCATTGATGCAAGCTTTCAGACCAT
FMO07852.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nrv2-RE | 1949 | CG9261-RE | 110..1077 | 7..974 | 4840 | 100 | Plus |
| nrv2-RA | 1980 | CG9261-RA | 141..1108 | 7..974 | 4840 | 100 | Plus |
| nrv2-RD | 2156 | CG9261-RD | 317..1284 | 7..974 | 4840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6791031..6791328 | 704..407 | 1475 | 99.7 | Minus |
| 2L | 23513712 | 2L | 6790798..6790969 | 874..703 | 860 | 100 | Minus |
| 2L | 23513712 | 2L | 6791699..6791842 | 293..150 | 720 | 100 | Minus |
| 2L | 23513712 | 2L | 6793228..6793371 | 150..7 | 720 | 100 | Minus |
| 2L | 23513712 | 2L | 6791518..6791640 | 411..289 | 615 | 100 | Minus |
| 2L | 23513712 | 2L | 6790642..6790742 | 974..874 | 505 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:59:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 925..961 | 866..901 | 119 | 83.8 | Plus |
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 4633..4686 | 252..199 | 117 | 68.5 | Minus |
FMO07852.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:01 Download gff for
FMO07852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nrv2-RE | 106..1079 | 7..982 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:58:14 Download gff for
FMO07852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nrv2-RD | 312..1290 | 1..982 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:05 Download gff for
FMO07852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nrv2-RD | 312..1290 | 1..982 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:05 Download gff for
FMO07852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6793228..6793375 | 1..150 | 97 | | Minus |
| 2L | 6791701..6791841 | 151..291 | 100 | <- | Minus |
| 2L | 6790636..6790742 | 874..982 | 96 | <- | Minus |
| 2L | 6790799..6790967 | 705..873 | 100 | <- | Minus |
| 2L | 6791031..6791323 | 412..704 | 100 | <- | Minus |
| 2L | 6791518..6791637 | 292..411 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:58:14 Download gff for
FMO07852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6790636..6790742 | 874..982 | 96 | <- | Minus |
| arm_2L | 6790799..6790967 | 705..873 | 100 | <- | Minus |
| arm_2L | 6791031..6791323 | 412..704 | 100 | <- | Minus |
| arm_2L | 6791518..6791637 | 292..411 | 100 | <- | Minus |
| arm_2L | 6791701..6791841 | 151..291 | 100 | <- | Minus |
| arm_2L | 6793228..6793375 | 1..150 | 97 | | Minus |
