FMO07853.5prime Sequence
1038 bp (420 high quality bases) assembled on 2009-08-11
> FMO07853.5prime
CAATCGACATGCCAGCAACGATGTTTGATTCCCATCTGAGTTTGTGCGCG
GGTCGCATTGTCGCCGATTCCACCACCACCACTACCTCCGGCATGGATGG
ATGCCATGGTGCCAAGACGATGATATGCCACGCTTGTCTTGTGCTACTGG
GTCCGCAGGATGCGTGTCACAATCTGGACAGCGAACAGGATCTGGCCAGC
AAGTACTACGGCTGTACTGGAGAGGATGCCGTTAGGGATTTGCCACCCCA
GTTGGTGCTGAAAAGCATCTGCGAGTGCTGCTATCATTTGGTGCAAAAGT
TCCACGACTTTCAACGCATGTGCGCACAGTCCTTGCGCAATTTTGAGAAG
CTGCTGCAGGACATCCACATCGGATGCCACAAACTGGAGGACCACACTTG
GCACTACTTGGACACCCCCTCGGAGAGCAACGAGTCCACTAATCCGGAAG
CCCAGTCGCACGCACCCTGCATCGCAGCGACGCAGGAGATTGAGGAAGTC
TACGTAATAGAGGACGAGTCAACCAAACAGGATCTGGGCCAAGAAAAGCT
ATCCATTTCTAGCAAGTTGCTGGGTGCCAGAAAACAACGAGGAGTGCGAC
ACACCCTCGAGTGCCGAATTTGCCACCGTGGCTTCTACAAACCGTCGCTG
CTGGAGGCCCATATGCAGCAGCATGAGGGTCTGAGACCGTATACCTGCGT
CCATTGTGCCAAGAGCTATGCCCGGGCCAATCTGCTGGAGTCGCACCTGC
GGCATATGCATAACAATGCCGACGCTGCGCGGATCATCTATGCCTGTCCG
AGCTGCAACAAAGTGTACACAGCGAACCGAAGTCTCAAATATCACATGAC
AAGACGCACGAAGGATCACGAGTCAAGTCCCCGGATGCGCGGCACATTTT
GTGAGAGTGTGCAGTGCTTTGCACGATAGGCACTCTTATCGCGCACAGAT
GGTCAATGGTACCGTTGAGGGTCCGAAATCTGCTGCGATGTCTGCGATCG
CTCATTCCTACACCATGAAAACATGTTGATCATCTGCT
FMO07853.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10654-RA | 1337 | CG10654-RA | 131..1170 | 9..1038 | 4380 | 95.8 | Plus |
| CG10654-RB | 1805 | CG10654-RB | 131..614 | 9..492 | 2315 | 98.6 | Plus |
| CG10654-RB | 1805 | CG10654-RB | 692..1248 | 492..1038 | 2070 | 93.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12507227..12507710 | 492..9 | 2315 | 98.6 | Minus |
| 3L | 28110227 | 3L | 12505969..12506487 | 1001..492 | 1815 | 92.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:21:08 has no hits.
FMO07853.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:00 Download gff for
FMO07853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10654-RA | 1..1008 | 9..1007 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:32 Download gff for
FMO07853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10654-RA | 122..1138 | 1..1007 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:58:23 Download gff for
FMO07853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10654-RA | 122..1138 | 1..1007 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:58:23 Download gff for
FMO07853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12505963..12506487 | 492..1007 | 94 | <- | Minus |
| 3L | 12507228..12507715 | 1..491 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:32 Download gff for
FMO07853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12499063..12499587 | 492..1007 | 94 | <- | Minus |
| arm_3L | 12500328..12500815 | 1..491 | 97 | | Minus |
