Clone FMO07859 Report

Search the DGRC for FMO07859

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:78
Well:59
Vector:pMK33-CFH-BD
Associated Gene/TranscriptLcp65Ag3-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO07859.5prime Sequence

341 bp (341 high quality bases) assembled on 2009-08-11

> FMO07859.5prime
CAGTCGACATGAAATTCCTGATTGTCTTCGTCGCCCTCTTCGCCGTGGCT
CTGGCTGCTCCTGCCGCTGAGGAACCCACAATCGTGCGCTCTGAATCCGA
CGTTGGACCCGAAAGCTTCAAATACGACTGGGAAACCTCCGATGGACAGG
CTGCTCAAGCTGTAGGTCAGCTGAACGACATTGGAACTGAGAACGAGGCT
ATCTCTGTGAGTGGATCCTACCGCTTCATTGCTGATGATGGCCAGACCTA
CCAAGTCAACTACATCGCCGATAAGAACGGATTCCAGCCCGAGGGTGCTC
ATCTGCCCGTTGCCCCCGTGGCAGCAAGCTTTCTAGACCAT

FMO07859.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:01
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp65Ag3-RA 543 CG18779-RA 60..375 8..323 1580 100 Plus
Lcp65Ag1-RA 517 CG10530-RA 61..376 8..323 1565 99.7 Plus
Lcp65Ag2-RA 543 CG10534-RA 61..375 8..322 1560 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6130554..6130749 323..128 980 100 Minus
3L 28110227 3L 6134838..6135033 323..128 965 99.5 Minus
3L 28110227 3L 6133158..6133352 322..128 960 99.5 Minus
3L 28110227 3L 6130811..6130930 127..8 600 100 Minus
3L 28110227 3L 6133414..6133533 127..8 600 100 Minus
3L 28110227 3L 6135095..6135214 127..8 600 100 Minus
3L 28110227 3L 6137725..6137826 314..213 390 92.2 Minus
3L 28110227 3L 6145194..6145289 213..308 300 87.5 Plus
3L 28110227 3L 6147570..6147653 319..236 300 90.5 Minus
3L 28110227 3L 6150441..6150524 319..236 300 90.5 Minus
3L 28110227 3L 6136385..6136555 321..151 255 76.6 Minus
3L 28110227 3L 6136699..6136742 50..7 190 95.5 Minus
Blast to na_te.dros performed on 2014-11-28 22:44:00 has no hits.

FMO07859.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:06 Download gff for FMO07859.5prime
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ag3-RA 50..376 1..328 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:44 Download gff for FMO07859.5prime
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ag3-RA 53..379 1..328 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:17 Download gff for FMO07859.5prime
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ag3-RA 53..379 1..328 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:17 Download gff for FMO07859.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6130550..6130749 128..328 99 <- Minus
3L 6130811..6130937 1..127 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:44 Download gff for FMO07859.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6123650..6123849 128..328 99 <- Minus
arm_3L 6123911..6124037 1..127 97   Minus