FMO07862.5prime Sequence
1063 bp (1007 high quality bases) assembled on 2009-08-11
> FMO07862.5prime
CAGTCGACATGAGTGCTATGTTGTTGATATCCTGCCTGACGCTGCTCGTC
TGTGTCCAGGCAGCGGTGACAGGGCCGGAAGCTCGATCCAGTGTGGACGC
CAAGGATCAGCAGCTGGCTACAGCGAGTGTTGGAATCCTCGACTCCGTGC
TTCGAGGAAAGAGCCGCCAGTCGCGGTGCGTGAGATGCTACGAGGATCGG
GATCGTGATAGGTACTACAGCGGATACTCCAGTCGAACGGGCGACGATAT
GCGAGGTAGTGCCTGGTACTACTCCGGCTACGATGATCGCAGCAGGGATC
GGGACTACGATCGCTACTACGATCGCTCCCGTTATTACGAAGATCGCTAT
ACTCCGAGAACATACGACCGCTATGAGGGTCGTGGCTATGATGATTATAG
AAGGGGATCTGCGTATGGAGGATCATACGATCGGGAACGCGGATATGGAT
ACGACAACCGGGATCGGTACTACAGTGGTGATCGCTACAGCGAGGGGTTA
TCCAGAGATCGCTACTACGATCGCTCGAGGACAAGCGGGTATGATCGTTA
TGATCCGTACGATCGCTACTACTCCAGGGGCCAGTCCGGTTTTGATAACT
CCGGACGAGGCTATTACTTTGCCACCGACGAGGATGAAAGCGACAGGAAT
CGAGGATATGGCTACTCCTACACTCGTCCCTCCTCCTCAATGAGCTCGCC
CTGCGGACGCATTTCCCGGAAATTGTCCCTATGCCGGTGGCTCCAAGGTC
ACCTCACCCGCCATTGGCAGCGACAGTTCGCGAGTGGGAGGCCATACCAA
TGTCCTGGGATCGGATGGAGGTCCTGGCAGTTGGAGTATCTGGGTGATCA
GGAGAAGGTCGGTGGAGCAGCAGTGGCAGCGGCGGTGGTAGCAGCAGCAG
CAGCAGCGGCAGTAGCAGCAGCAGCAGCTCAAGCGGCAGCGGCGGCAGTC
CGGAGAAGGGAGCGTGACGGACAGGAACGGGATGCAAGAGGCTTGCCTCT
TGTCACCCCTTGTAACTCTTCTTATGGTGACGACCACGTTCCTCCCAACC
TTTCTAAACACAT
FMO07862.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:53:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12911-RA | 1597 | CG12911-RA | 171..1208 | 8..1039 | 4860 | 98.5 | Plus |
| CG12911-RC | 1571 | CG12911-RC | 171..1152 | 8..986 | 4700 | 99 | Plus |
| CG12911-RF | 1196 | CG12911-RF | 171..741 | 8..578 | 2855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:53:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10258970..10259451 | 26..507 | 2410 | 100 | Plus |
| 2R | 25286936 | 2R | 10260008..10260392 | 573..956 | 1765 | 99 | Plus |
| 2R | 25286936 | 2R | 10259514..10259586 | 506..578 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:53:27 has no hits.
FMO07862.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:37:26 Download gff for
FMO07862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12911-RA | 165..1209 | 1..1044 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:37 Download gff for
FMO07862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12911-RA | 168..1212 | 1..1044 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:08 Download gff for
FMO07862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12911-RA | 168..1212 | 1..1044 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:08 Download gff for
FMO07862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10258971..10259451 | 27..507 | 100 | -> | Plus |
| 2R | 10259516..10259585 | 508..577 | 100 | -> | Plus |
| 2R | 10260013..10260429 | 578..990 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:37 Download gff for
FMO07862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6146476..6146956 | 27..507 | 100 | -> | Plus |
| arm_2R | 6147021..6147090 | 508..577 | 100 | -> | Plus |
| arm_2R | 6147518..6147934 | 578..990 | 97 | -> | Plus |
