FMO07866.5prime Sequence
542 bp (542 high quality bases) assembled on 2009-08-11
> FMO07866.5prime
CAGTCGACATGAAGCTCCTGATGCTCGGCACAATTTTGGCATTCTTTTCT
GTAATCTCGGCGACAATGGCGGCTAACAAGGAGAGGACTTTCATCATGGT
CAAGCCCGATGGCGTCCAGCGCGGGCTCGTCGGCAAGATCATCGAGCGCT
TCGAGCAGAAGGGCTTCAAGCTGGTCGCCCTGAAGTTCACCTGGGCCTCC
AAGGAGCTGCTGGAGAAGCACTACGCTGATCTGTCCGCCCGCCCCTTCTT
CCCCGGACTCGTGAACTACATGAACTCCGGCCCCGTGGTGCCCATGGTGT
GGGAGGGTCTGAATGTGGTCAAGACCGGTCGCCAGATGCTCGGCGCCACC
AACCCCGCCGACTCGCTGCCCGGCACCATCCGCGGTGACTTCTGCATTCA
GGTCGGACGCAACATCATCCACGGCTCCGATGCCGTCGAGTCTGCCGAGA
AGGAGATCGCCCTGTGGTTCAACGAAAAGGAGCTGGTCACCTGGACCCCG
GCCGCCAAGGACTGGATCTACGAAGCAAGCTTTCTAGACCAT
FMO07866.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:56:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| awd-RD | 727 | CG2210-RD | 121..638 | 7..524 | 2590 | 100 | Plus |
| awd-RC | 634 | CG2210-RC | 28..545 | 7..524 | 2590 | 100 | Plus |
| awd-RE | 578 | CG2210-RE | 1..489 | 36..524 | 2445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:56:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31745261..31745591 | 524..194 | 1655 | 100 | Minus |
| 3R | 32079331 | 3R | 31745769..31745957 | 195..7 | 945 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:56:18 has no hits.
FMO07866.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:26:54 Download gff for
FMO07866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| awd-RA | 72..594 | 1..524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:10 Download gff for
FMO07866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| awd-RC | 23..545 | 1..524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:13 Download gff for
FMO07866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| awd-RC | 23..545 | 1..524 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:13 Download gff for
FMO07866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31745261..31745590 | 195..524 | 100 | <- | Minus |
| 3R | 31745770..31745959 | 1..194 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:10 Download gff for
FMO07866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27570983..27571312 | 195..524 | 100 | <- | Minus |
| arm_3R | 27571492..27571681 | 1..194 | 97 | | Minus |
