Clone FMO07868 Report

Search the DGRC for FMO07868

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:78
Well:68
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG5773-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO07868.5prime Sequence

407 bp (407 high quality bases) assembled on 2009-08-11

> FMO07868.5prime
CAGTCGACATGGAAGGCCAACGCGTGGCAGTCGTCGCATTTGCTGTTTTG
CTCGCCGGATTGTGCGTGCTATCCGGTCTGAATGCGGCACCCGTGGAATG
CAATAATGGCGGTGGCATCCAGATCTCTGACGATGGTTTCCAGAGCCAGA
CGCAAACCGGTCCCGGCTGCCAGACCCAGACCTCCGAGGATGGAACCCAG
AGCCAAAGCCAGAGTCAGTCGGGCAATGGCTACCAATCGCAGACGCAGTG
CAGCGGCTCATCCTGTGGTCAGTTCAACACCTTCCCGCCGCTATTCACCA
TTAAGCCGCTGGAGCCATTGGCACCCATCACTTGGCAGCCATGGGGGCAA
ATGAGGAACAACCAGGTGCAGCAGCAGGTCAATTTTGGCGCAAGCTTTCT
AGACCAT

FMO07868.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:35:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG5773-RC 1285 CG5773-RC 83..465 7..389 1915 100 Plus
CG5773-RB 514 CG5773-RB 83..465 7..389 1915 100 Plus
CG5773-RA 586 CG5773-RA 155..537 7..389 1915 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:35:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18043116..18043421 389..84 1530 100 Minus
2R 25286936 2R 18043513..18043590 84..7 390 100 Minus
Blast to na_te.dros performed on 2014-11-28 21:35:23 has no hits.

FMO07868.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:26:52 Download gff for FMO07868.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5773-RA 149..548 1..403 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:32:23 Download gff for FMO07868.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5773-RA 149..548 1..403 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:04 Download gff for FMO07868.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5773-RA 149..548 1..403 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:04 Download gff for FMO07868.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18043105..18043421 84..403 98 <- Minus
2R 18043514..18043596 1..83 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:32:23 Download gff for FMO07868.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13930610..13930926 84..403 98 <- Minus
arm_2R 13931019..13931101 1..83 97   Minus