Clone FMO07871 Report

Search the DGRC for FMO07871

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:78
Well:71
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG16704-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO07871.5prime Sequence

263 bp (263 high quality bases) assembled on 2009-08-11

> FMO07871.5prime
CAGTCGACATGAAATACCTAGTCGTTTTTGCACTCATCTGCTGTCTTGTG
GCATCAGCATTTGCGACTTTGAAAAACCCAATCTGTGGCGAGGAGTTTGG
CGTCAAGGGTACTTGCCGTTCCCTGCAACCCATGTGGACCTATCGCCCAG
ATACGAACGAGTGCTTCACCTTCAATTACTCCGGCTGCCACGGAAACAAT
AATCTATTCCACAAAAAGTTGGAGTGCGAAGAAAAATGCAAAATAGCAAG
CTTTCTAGACCAT

FMO07871.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:13:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG16704-RB 350 CG16704-RB 48..284 9..245 1185 100 Plus
CG16704-RA 335 CG16704-RA 48..284 9..245 1185 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:13:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3692189..3692355 245..79 835 100 Minus
2L 23513712 2L 3692471..3692540 78..9 350 100 Minus
Blast to na_te.dros performed on 2014-11-28 19:13:34 has no hits.

FMO07871.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:37:23 Download gff for FMO07871.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16704-RA 41..289 1..250 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:23 Download gff for FMO07871.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16704-RA 40..288 1..250 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:35 Download gff for FMO07871.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16704-RA 40..288 1..250 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:35 Download gff for FMO07871.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3692190..3692355 79..244 100 <- Minus
2L 3692471..3692546 1..78 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:23 Download gff for FMO07871.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3692190..3692355 79..244 100 <- Minus
arm_2L 3692471..3692546 1..78 94   Minus