FMO07876.5prime Sequence
1127 bp (1003 high quality bases) assembled on 2009-08-11
> FMO07876.5prime
CAGTCGACATGCTGCCTCTGCGCCGGAGTTTGCTCAAACCGCTCCAGGAT
GTACTCCGACATAGCCACCGCCAGATGTCGCAGAAGAACCTCTTGGAGCT
CACAGATCGAGGCTTTTTCCACGGCATATTTCCTGATACAGCGGCTCCCA
GGATGAAACAGCTTTTTACCAGAGGCCAACAGAGCATCTACGCAGGATTC
GATCCCACCGCTGACAGTCTACACGTGGGCAATCTGCTTGTAATAATGGG
CCTGATCCACTGCCAAAGAGCCGGCCACAGACCTATTGCCCTAGTAGGAG
GAGCAACTGGACTCATAGGGGATCCCAGTGGACGCAAGACAGAGCGCAAC
CAACTGGGCGAGACGGTGATCGAGACCAATCTAAAGGCTATCGAGCAACA
GCTTCGCCGGGTGTTCGAAAATCACGAGAACTGCCTTTGGGACTCTAAGA
AACAGAAATTGCCACTGGCTCCCCTAATAATCGTCAACAATGCCGACTGG
TATGCGGACCTGCAGCTCATCGACTTTGTGGCCAACATGGGACGACACTT
TCGCATGGGGTCAATGCTCTCCAGATCCTCGGTGCAGTCCCGCCTGGAGT
CGGAGGACGGAATGAGCTTCACCGAGTTCACCTACCAGATTTTCCAAGCC
TACGACTGGCTGCACCTACTGCGCCGCCACAACTGCTGCTTTCAAATGGG
AGGCTCCGATCAGACGGGCAATTTAATGACTGGACACGAGCTTATTAGCC
GCGTAGAGCGAAAGCGAGAGGTCTTCGGGCTCACCCTGCCATTGGTCACG
ACGGAAGAGGGCGATAAGTTCGGCAAGTCGGCAGGCAATGCAGTGTGGCT
AGACGGTAACAAGACCTCGCCTTTCGCCCTCTACCAGTTTTTCCTGCGCA
TGCCAGACTCCGAGGTCGAAAGCTCCTGAGCTGTTCACTTCATCCCGCTG
CCCAGGTGGAGCAGTGATGCGGAGCACACGAGGAGCCCGAGAAGCGGATG
CGCAGACTCTGCTGCTGAGACTGACTCTGCTGGTCATGAAAGTGGCTGAG
CAGCGACGGTGTGAACAATGCTTATACAAGCACTGAGTAACGGACTCACT
TTCGGAATTCACGACTTCAGGCTCATG
FMO07876.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-tyr-m-RA | 1540 | CG16912-RA | 72..1162 | 9..1079 | 4915 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24782297..24782840 | 1014..479 | 2305 | 98.3 | Minus |
| 2R | 25286936 | 2R | 24782893..24783225 | 478..146 | 1665 | 100 | Minus |
| 2R | 25286936 | 2R | 24783293..24783429 | 145..9 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:03:06 has no hits.
FMO07876.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:26:48 Download gff for
FMO07876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16912-RA | 63..1123 | 1..1049 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:49 Download gff for
FMO07876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-tyr-m-RA | 68..1128 | 1..1049 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:59 Download gff for
FMO07876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-tyr-m-RA | 68..1128 | 1..1049 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:59 Download gff for
FMO07876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24783293..24783433 | 1..145 | 97 | | Minus |
| 2R | 24782264..24782840 | 479..1043 | 97 | <- | Minus |
| 2R | 24782893..24783225 | 146..478 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:49 Download gff for
FMO07876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20669787..20670363 | 479..1043 | 97 | <- | Minus |
| arm_2R | 20670416..20670748 | 146..478 | 100 | <- | Minus |
| arm_2R | 20670816..20670956 | 1..145 | 97 | | Minus |
