FMO07877.5prime Sequence
758 bp (758 high quality bases) assembled on 2009-08-11
> FMO07877.5prime
CAGTCGACATGGACAAACTAAATGAAAATGCTCGACAGCGGAAGCAGATC
AAGCTGGGAGAGATCGACACGGGCCCCATTATAGTGGCCCTCCTGCTAGG
CTTCATTGCAGTGGCCATATTTGTGATCCTGCGAAGACGCTCTGCTGGTC
GCAAGGACTTTCTGCTTACTGGGCTCAGTGAATCCGGCAAAAGTGCCATC
TTCATGCAGCTGATCCACGGCAAATTCCCGGCCACTTTTACTTCCATCAA
GGAGAACGTGGGAGATTACCGGACGGGCAGCGCGTCTGCCAGGTTAGTGG
ATATACCCGGACATTATAGGGTGCGCGACAAGTGCTTGGAGCTATATAAA
CACCGTGCCAAGGGCATTGTCTTTGTGGTGGACTCGGTTACTGCCCACAA
GGATATCCGGGATGTGGCAGACTTTCTGTACACCATCCTATCAGACAGTG
CCACACAACCCTGCTCTGTGCTAGTCCTTTGCAACAAGCAGGATCAAACC
ACCGCCAAGAGTGCCCAGGTCATTAAAAGCTTATTGGAGTCGGAACTGCA
CACAGTGCGCGACACCAGAAGCCGCAAACTTCAATCCGTGGGCGACGAGG
ATGGCAGCAAATCCATCACATTGGGCAAGCCAGGCCGTGACTTCGAATTC
TCACACATCGCACAGAATATCCAGTTTGCGGAAGCCTCCGCCAAGGACAC
TGAACTTGATCCCCTCACCGATTGGCTCGCTCGGTTGCTGGCAAGCTTTC
TAGACCAT
FMO07877.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SrpRbeta-RB | 1135 | CG33162-RB | 79..814 | 5..740 | 3665 | 99.9 | Plus |
| SrpRbeta-RA | 984 | CG33162-RA | 79..814 | 5..740 | 3665 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8719270..8719588 | 740..422 | 1595 | 100 | Minus |
| 3L | 28110227 | 3L | 8719646..8719953 | 421..114 | 1540 | 100 | Minus |
| 3L | 28110227 | 3L | 8720038..8720147 | 114..5 | 535 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:39:33 has no hits.
FMO07877.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:26:47 Download gff for
FMO07877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SrpRbeta-RA | 67..812 | 1..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:05 Download gff for
FMO07877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SrpRbeta-RA | 75..820 | 1..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:53 Download gff for
FMO07877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SrpRbeta-RA | 75..820 | 1..748 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:53 Download gff for
FMO07877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8719646..8719952 | 115..421 | 100 | <- | Minus |
| 3L | 8720038..8720150 | 1..114 | 97 | | Minus |
| 3L | 8719264..8719588 | 422..748 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:05 Download gff for
FMO07877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8713138..8713250 | 1..114 | 97 | | Minus |
| arm_3L | 8712364..8712688 | 422..748 | 98 | <- | Minus |
| arm_3L | 8712746..8713052 | 115..421 | 100 | <- | Minus |
