FMO07879.5prime Sequence
709 bp (709 high quality bases) assembled on 2009-08-11
> FMO07879.5prime
CAGTCGACATGGACTGCGGCACATCTATGGTCAAATAAATCCTCTTCATA
TTCAACACCATTGTGTCGGTTATCGGCATCTTGGGCATTGTTTATGGCGT
GCTGATTCTGAAGAGCATCGGTGTAGTTGAAGTTAATGGACAGGTGGGCT
TCCCGATACAGGCTCTTATGCCGATCATTCTTATCAGCTTGGGCTCGATT
GTGGTCTTCATTTCATTCCTGGGATGCTGCGGTGCCATTCGCGAATCCGT
CTGCATGACCATGAGCTATGCCACCTTCTTGCTGATCCTGCTGATCCTGC
AGCTGACGTTCGTTGTTCTGCTGTTTACCCACAGGGAAGAGTTTGAGAAC
GCAATGGGAAACGTTATCGAGAATGCATGGAATTCTGAACATACTTATAA
GGGAGGTGTCTTCGACACCATTCAGAAATCGTTGCACTGCTGCGGATCAA
GCTCTGCTCTGGACTACATCGGCAAGGGAGACTTGGTGCCCCCAAGTTGT
TGCACCGGTTCGTGCCTGATCCCGACTAACTACTACCCGGGATGCCGTGG
AAAGTTCGTCGAATTAATGACCACTGGATCTGATAACGCTAAATATGTGG
GCATCGGCCTCATCGGAATAGAGCTGATCGGCTTTATCTTTGCCTGCTGC
CTGGCCAACAACGTGCGTAACTACAAGCGCCGGAACGCCTACGCAGCTTT
CTAGACCAT
FMO07879.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp42Ee-RB | 1381 | CG10106-RB | 94..777 | 9..692 | 3390 | 99.7 | Plus |
| Tsp42Ee-RA | 1394 | CG10106-RA | 107..790 | 9..692 | 3390 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7017012..7017375 | 68..431 | 1820 | 100 | Plus |
| 2R | 25286936 | 2R | 7017434..7017630 | 431..627 | 955 | 99 | Plus |
| 2R | 25286936 | 2R | 7017688..7017758 | 622..692 | 355 | 100 | Plus |
| 2R | 25286936 | 2R | 7013057..7013118 | 9..70 | 295 | 98.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:00:19 has no hits.
FMO07879.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:26:45 Download gff for
FMO07879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ee-RA | 98..793 | 1..697 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:05 Download gff for
FMO07879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ee-RA | 100..795 | 1..697 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:31 Download gff for
FMO07879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ee-RA | 100..795 | 1..697 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:31 Download gff for
FMO07879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7013050..7013116 | 1..68 | 94 | -> | Plus |
| 2R | 7017013..7017375 | 69..431 | 100 | -> | Plus |
| 2R | 7017435..7017626 | 432..623 | 99 | -> | Plus |
| 2R | 7017690..7017763 | 624..697 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:05 Download gff for
FMO07879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2900555..2900621 | 1..68 | 94 | -> | Plus |
| arm_2R | 2904518..2904880 | 69..431 | 100 | -> | Plus |
| arm_2R | 2904940..2905131 | 432..623 | 99 | -> | Plus |
| arm_2R | 2905195..2905268 | 624..697 | 97 | | Plus |
