FMO07882.5prime Sequence
1072 bp (797 high quality bases) assembled on 2009-08-11
> FMO07882.5prime
CAGTCGACATGTCCACACAGCAAGCGGAGAATGAGGAGAGTGCAGCGGCG
AAGTCCAAGCGACCTTCAGATTCGGCCTTCAAGCAACAGCGCCTGCCCGC
CTGGCAGCCCGTCCTGACCGCCCGCACCGTACTGCCCACCTTCTTCGTTA
TCGGAGTTCTATTCATACCCATCGGCGTGGTCCTGCTCCACCTGAGCAAC
ACCGCCAACGAGCTGATCATCGACTACACCAAGTGCAGGCGCTCGGGCGG
AAATACCACCTGTGCGGAGTATCTGGAGGCCAACCCCGGCGTTACGTGCC
CCTGCGAGGTGCCCTTCGTCCTGCCCTCGGACTTCAATGGTGTGGTATAC
ATGTACTACGGACTGACCAACTACTATCAGAACCATCGGCGCTATGTGAA
GTCACGGGACGACGAGCAGCTGCTGGGTCACCTGTCGCAAACGCCCAGTA
CAGACTGTGCCCCCTTCGCCTATGATCCCGATTCCGGAAAGCCCATCGCG
CCCTGCGGTGCCATTGCCAACTCGCTGTTCAATGACACGCTGACCCTCTT
GCAGGGTGGATCCGAGATCAAGCTGCTGAAGACGGACATTGCCTGGCCGT
CGGACAAGCGCGTCAAGTTCCGAAACCCAGAGGGTAACCTGAACGTCTCC
CTTGAGGGCTTCTCAAAGCCAATTTTCTGGCAGATGGTCTGGCCGACCTG
GACCCGGAGAATCCGGACAACAATGGCTTCCAGAACGAGGATCTGATCGT
GTGGATGCGCACCGCCGCTCTGCCCAGCTTCCGGAAGCTATATCGCCGTC
TCACCAAACGAACACCAACTATGCCAACGGCCTGAAGTCTGGCAATTATA
CGCTTAACATTAAGTATAATTATCCGTGTGTCGTTCGACGGCCCGAGCGA
ATGATACTCTCCACAACATCAGAGCTCAGGGACAAGACCCGTTCCTGCGC
CATGGCGTACATTGTGTTGGATGCAATTAGCATCACCCTGGGCCTTGTCC
CTGCTATTTATTCAATGCAAGCTAGTCCTCATCACACTGGAGATGATCAA
CGAGACCGCACACGTAGTACTT
FMO07882.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9947-RA | 1261 | CG9947-RA | 94..1163 | 8..1071 | 4670 | 96.6 | Plus |
| CG9947-RB | 3079 | CG9947-RB | 94..1104 | 8..1014 | 4625 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16439827..16440163 | 868..534 | 1555 | 98.8 | Minus |
| X | 23542271 | X | 16440656..16440928 | 339..67 | 1365 | 100 | Minus |
| X | 23542271 | X | 16440217..16440412 | 534..339 | 980 | 100 | Minus |
| X | 23542271 | X | 16441142..16441203 | 69..8 | 310 | 100 | Minus |
| X | 23542271 | X | 16439615..16439751 | 1014..878 | 285 | 87.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:03:00 has no hits.
FMO07882.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:26:51 Download gff for
FMO07882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9947-RA | 71..1147 | 1..1072 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:58 Download gff for
FMO07882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9947-RA | 87..1163 | 1..1072 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:56 Download gff for
FMO07882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9947-RA | 87..1163 | 1..1072 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:56 Download gff for
FMO07882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16441142..16441206 | 1..69 | 94 | | Minus |
| X | 16439827..16440162 | 535..868 | 98 | <- | Minus |
| X | 16440217..16440412 | 339..534 | 100 | <- | Minus |
| X | 16440657..16440925 | 70..338 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:58 Download gff for
FMO07882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16335175..16335239 | 1..69 | 94 | | Minus |
| arm_X | 16333860..16334195 | 535..868 | 98 | <- | Minus |
| arm_X | 16334250..16334445 | 339..534 | 100 | <- | Minus |
| arm_X | 16334690..16334958 | 70..338 | 100 | <- | Minus |
