FMO07887.5prime Sequence
1114 bp (817 high quality bases) assembled on 2009-08-11
> FMO07887.5prime
CAGTCGACATGAGAAAATTCTGTTTGCTTCTTTTAATGGCGCATTTTGTG
GCCTCAAGCCGAAATTTAAACGATATTCTCGGTCGCGAGGAGTGGATTAG
CATAGCCAAGGAATACATCAAGAACCACAAGCCTTACAAAGCCAAAATCT
ACCCACCCTACAAGCCGCGCATCGTAAATTTTACCAATCCGTTCGATGGA
GATTTTTGGGACACAACTACGGTGGCCACCAATCCGCAGGAGACTACTGG
CTACTTCACTGGGGAAGTATCTACTACAACGGAGAAAAGTGCCACTGAGG
AATCTACAACTACGGCGGTGGATTATTCAACCACCGAATCTAGTTATGTA
ACTTCAACCACGGATACTTTATATTCCACGACAACAGCTTGGCCGGAAGT
CACCAGCACAGATGCTATAGATGCCACTGAATCAGTAGCCCTATATTCCA
CAACAACTTCCAGTCCAGAAGCTGCAGATTCAACGACAGAAAGCAATTCA
GACAGTACTGAATATGCTGAATCAACGTTAATTTATCCAGATTTATCTAC
AGGATGGCAAGAAACTACTACAGAAACCATTCAGAGCTCTACAGGATTGC
AGGAATCAACAACAACAGAGTTTATGCCAAGTACTACGGAATTTCCGGAA
TCAACGACTACTTTAAGTTCTGAATTTTTCAGAGAAAGAACTAATAACAA
CTACCACAGAAAATAGAAATCCAATCCAAGCACCTACAAATTGGCAGGAA
TCAACAACTGAATCTGCTGATTCTACCACAGAACCGAACGATTCCACGTT
TGCATTATCCACAGATCAAACTACAACTGAAAACAGCATAAAACTTCAAC
AGATGAATGTTTTTCACCACAGACACCCAGGGATCTACTATCATCCTTGC
TGGACATCATTGCCACCACTCCAGGCCGTGAAACTACCACGTCGTACTGG
ATGCAGTGATGGACAAGAACAAAGAGGAAAGTTCTACATTATAACACCAT
TTGGATTTTATTTACATCACGGAAATACTAGAACTCAATTGAAACCACAA
CACCAAGGCAATTGAATTCGTCGAAAATACGTCGCCAAAAAACGAAAAAC
TGAAGTTCCTCTTC
FMO07887.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31253-RA | 1228 | CG31253-RA | 40..1141 | 9..1106 | 4570 | 95.4 | Plus |
| CG31131-RB | 1228 | CG31131-RB | 40..1141 | 9..1106 | 4570 | 95.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27959475..27960534 | 1068..9 | 4190 | 95.7 | Minus |
| 3R | 32079331 | 3R | 27962121..27963180 | 1068..9 | 4190 | 95.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:02:18 has no hits.
FMO07887.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:26:39 Download gff for
FMO07887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31253-RA | 29..1117 | 1..1087 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:45 Download gff for
FMO07887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31131-RB | 33..1121 | 1..1087 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:35 Download gff for
FMO07887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31131-RB | 33..1121 | 1..1087 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:35 Download gff for
FMO07887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27959453..27960538 | 1..1087 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:45 Download gff for
FMO07887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23785175..23786260 | 1..1087 | 95 | | Minus |
