FMO07889.5prime Sequence
1128 bp (1009 high quality bases) assembled on 2009-08-11
> FMO07889.5prime
CAGTCGACATGGGACGAGTTCCGGCAAAGATGCACACGCTCCTCGCGCTC
CTCCTCCAGCTTCTGGTGGCCTCCATCCACGCTATCGAGTGGTCGCTTCC
GGATGTGATCAATTCCATCGGAAATGTGGGCACCAGCATCGTGGATCCCA
GTCTTCTGCCCACACCCCAAGGACTCCTCGAAGGCAGCAAGCAGCTCATC
GCGGGATATCCATTCGAGTTCGTCTCCAACTCCCTGAACGTCATTTGCTC
CCAGGCGCTGGCTTCAAACAAAATCAAGTCGAAATACTCGCCGGATATCA
ATAAAATGAACTTCCAACTGCAAACGGCGTGTGAAAAGAAAAACTTCCCA
CTTACAAGTCCGGAGTCCATGTGGAAGAGTCCGCTTTTCGATGTCAAGAA
GAAGGTCGTCATTCTGGCCACCGGATGGACCACCACCGTGAATGGTTCCG
ATACCATCGAAGTCTTCTCAAAGGCCTATAATTGCCGTGGGGATGTCAAC
TTTGTGGCGGTGGATGCTGCTCGTTTCGTTGATACCCTGTACACCTGGTC
GGCTTTCAATACGGAGGAGATTGGCGAGAACATCGCCCTCGGATTGGTGA
AGCTTCTCGATCTGGTGCCGGTGGAGAATATCCACTTGATTGGCCATAGC
CTGGGCGCCCACATTGTGGGTTCGGCGGGACGGCACCTGCAACACCTGAC
CAATCAGACGATACCCAGGATTACTGGATTGGATCCGGCCAAGCCGTGCT
TCAACGAGGGTGAAGCCCTCTCTGGTCTGATGCGCGGAGATGCCCACTTC
GTCGATGTGATCCATAGCAATCCCGGGGTGCTGGGCAAGCGGGATCCGGT
GGGCGATGTGGACTTCTATCCGGGCGGAATGAGCCCCTTGCGGCGGGCTG
TTTCTCGGTAACCTGTGCCCATGCCCGATCCTGGGAATATTTTGCGGAAA
CCGTTTTCCCAGGCAATGAGCGCACATCATGGCCACTCGCTGCAATTCGA
ATTCAAAACTGGGCGAGTTCCGCTGTCGGCGACGAAGGTGCCATTGGATA
GGCGGTGCCCCAAACATTAAGGGCACCTATTTTCTGAGTCACGGCCTCCC
ACGTCCGCATGCATGCCTCGGTTGGGAT
FMO07889.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5162-RB | 1533 | CG5162-RB | 30..1155 | 9..1124 | 5120 | 97.6 | Plus |
| CG5162-RA | 1382 | CG5162-RA | 30..1155 | 9..1124 | 5120 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17216359..17216944 | 506..1086 | 2490 | 96.6 | Plus |
| X | 23542271 | X | 17215736..17215996 | 247..507 | 1305 | 100 | Plus |
| X | 23542271 | X | 17215333..17215571 | 9..247 | 1195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:02:04 has no hits.
FMO07889.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:26:38 Download gff for
FMO07889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5162-RA | 28..1163 | 1..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:40 Download gff for
FMO07889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5162-RA | 26..1161 | 1..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:26 Download gff for
FMO07889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5162-RA | 26..1161 | 1..1128 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:26 Download gff for
FMO07889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17215329..17215570 | 1..246 | 98 | -> | Plus |
| X | 17215736..17215995 | 247..506 | 100 | -> | Plus |
| X | 17216360..17216993 | 507..1128 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:40 Download gff for
FMO07889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17109362..17109603 | 1..246 | 98 | -> | Plus |
| arm_X | 17109769..17110028 | 247..506 | 100 | -> | Plus |
| arm_X | 17110393..17111026 | 507..1128 | 95 | | Plus |
