FMO07891.5prime Sequence
1045 bp (1045 high quality bases) assembled on 2009-08-11
> FMO07891.5prime
CAGTCGACATGAAGACATTCCTGATTTTGGCATTCTTTGCTCTGGCCGCC
TCGGCTATTCCGATCAAGGAATCTGAGCGCGTCCATGGGGAGAACGGCTG
GTACGTTCCCCAGGAGGATGGCACTTCCGAGTGGGTGGACATGGACGTTG
CCGAACAGTGGATGGAAGCCCAAGAGTTGCTGGAAAGTCGTGGCTTGACC
ACCGTTCCCGTAAAGTTCTACCTTTACACCTCCTCCAACCCCACCAAGGG
CAAGAAGATCACCGCCTCCACCAAGTCCATTGATGCCTCCAGCTTTAACT
CCGCCCATCCAACTCGCTTTGTGATCCACGGCTGGACCCAGAGCTACACC
GCCAGCATGAACAAGGACATCCGCAGTGCCTGGCTCTCCAGAGGAGACTA
CAACGTGATCGTCGTCGACTGGGCCCGTGCTCGTTCCGTGGATTACGCGA
CTTCTGTTTTGGCTGTCGCTGCCACCGGAAAGAAGGTTGCCAAGATGATC
AACTTCCTGAAGGACAACCACGGTCTGAATTTGAACGATTTGTACGTGAT
TGGTCACAGCCTGGGCGCCCATGTGGCTGGATATGCCGGCAAGAACACCG
ACGGCCAGGTGCACACCATCATTGGTCTGGACCCCGCCCTGCCCCTCTTC
AGCTACAACAAGCCCAACAAGCGTCTGAATTCCGACGATGCCTGGTATGT
GGAGTCCATCCAGACCAATGGTGGCACTCTGGGATTCCTGAAGCCCATCG
GCAAGGGAGCTTTCTACCCCAACGGAGGAAAGACCCAGCCCGGATGCGGA
TTGGACCTGACTGGCGCCTGCTCCCACGGACGCTCTACAACCTACTACGC
CGAGGCCGTCTCCGAGGACACTTCGGAACCATGAAGTGCGGAGACTACGA
GGAAGCCGTTTCCAAGAATGCGAAGCACCTACTCCAGCGTTCGCATGGGA
GCTGAATACAATGCCTACATGGTCGAGGGTGACTACTATGTGCCCGTAAA
CAGCAGGCTCCTTCGCATGAATTAACGCCAGCTTTCTTAGAACAT
FMO07891.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:35:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6277-RA | 1085 | CG6277-RA | 31..1053 | 9..1026 | 4900 | 99.1 | Plus |
| CG6271-RA | 1072 | CG6271-RA | 22..1044 | 9..1026 | 3145 | 87.7 | Plus |
| CG6283-RA | 1083 | CG6283-RA | 323..1018 | 315..1004 | 1335 | 80.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:35:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27022126..27023086 | 1005..48 | 4610 | 99.4 | Minus |
| 3R | 32079331 | 3R | 27025019..27025960 | 1005..67 | 2925 | 88.1 | Minus |
| 3R | 32079331 | 3R | 27020303..27020998 | 1004..315 | 1210 | 79.6 | Minus |
| 3R | 32079331 | 3R | 27005982..27006583 | 997..402 | 860 | 77.7 | Minus |
| 3R | 32079331 | 3R | 27018690..27019142 | 1001..555 | 310 | 73.3 | Minus |
| 3R | 32079331 | 3R | 27017499..27017623 | 748..624 | 265 | 80.8 | Minus |
| 3R | 32079331 | 3R | 27023148..27023187 | 48..9 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:35:18 has no hits.
FMO07891.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:26:36 Download gff for
FMO07891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6277-RA | 22..1048 | 5..1026 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:32:21 Download gff for
FMO07891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6277-RA | 27..1053 | 5..1026 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:02 Download gff for
FMO07891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6277-RA | 27..1053 | 5..1026 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:02 Download gff for
FMO07891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27022103..27023085 | 49..1026 | 99 | <- | Minus |
| 3R | 27023148..27023191 | 5..48 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:32:21 Download gff for
FMO07891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22847825..22848807 | 49..1026 | 99 | <- | Minus |
| arm_3R | 22848870..22848913 | 5..48 | 95 | | Minus |
