FMO07894.5prime Sequence
1126 bp (1002 high quality bases) assembled on 2009-08-11
> FMO07894.5prime
CAGTCGACATGGAGAAGGTGGAGGCGGTAACAGTGTCCAATGTTGATCCC
TATAGGCGGATCCTAAACAAGGTGGTGTCCCAGCTGCTATTGGACAAGGG
GGCCGGCCAAGCGAGCAACCACAGCCTGGAGACGCTCACCCAGATGCTGC
AGGCGTTGATCTGGGAGATCGGCAATTCGGCGCATAACTACTGCGAGCTA
AGTGGACGCACGATGCCCACCGTGGGCGATGTCAGTTTGGCCCTGATTAA
CATGGGCATTTCGATCTCCAATTTGGATCCGTACATGCGCAAGGAGACGC
ACGTGCCCATTCCACTGCCCCCACAGCAGACGCAGCAGCGCCCGCTGAGT
CTGCTGCAAGCGGGCATCAAGGCCCCGCATCCCCACTACGTGCCCAGCTA
CTTCCCTCCCATGCCCGATCCGCACGCCTACATACGGACGCCCACGCACA
AGCAGCCCGTAACAGAGTACGAGGCCATCAGGGAGAAGGCCGCCTGCCAG
AAGCGGGACATCGAGAAGGCGCTCACAAAGTTCCTCTGCAAGACCACGGA
GACGAACAACCTCTTTCCCACCGAGGACAACATGTTTCCTTTAATTGCCT
GCAAACCGGCCTTTCCTCCCTATGCAGCCGCTTTAAATCCCACAGATCAG
GTGTTTGACTTCGAGGAGCTGGAGTACCACTATCTGGTGGCCAATCGCAC
AGAAGATGAGCCCAGCAAAGACGACGGCGAAGAGGGCGATAGCGAAAACG
AGGAGATAGATGGCGAAGAGGGCGATAGCGAAAACGAGGAGATGGATGGC
GACAAATCCAAAGAGGAGAAGCCCGAGCTGGATATCAAGCCCAATTCCAA
CACAAACAAGGCCATTTTGGAGAACCCCAACATCGATAATCCCTATTTGC
GGGCGGCTACTCTGCCCAAGCGATCCAAAAATGCCCCCACACCCGGAACC
ATGCCCAGCAGGAGTCTGGCCACCACGGCGCCAACGAATACGAACGCCCT
CCAATCTAGAGAATAACAAACTAACCCTGCAGCTTTCTAGACATCGTTTG
GCGCCGGCCAGGTAAGTGGTCTAATCTTATCCTATCATAATCTAATCCAC
TAGCCTAGGGAATCTGTCTGACTGCT
FMO07894.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Taf8-RA | 1341 | CG7128-RA | 90..848 | 8..766 | 3780 | 99.9 | Plus |
| Taf8-RA | 1341 | CG7128-RA | 808..1072 | 762..1026 | 1200 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18102268..18102702 | 157..591 | 2175 | 100 | Plus |
| X | 23542271 | X | 18102949..18103198 | 762..1012 | 1160 | 98.4 | Plus |
| X | 23542271 | X | 18102059..18102207 | 8..156 | 745 | 100 | Plus |
| X | 23542271 | X | 18102758..18102886 | 592..720 | 645 | 100 | Plus |
| X | 23542271 | X | 18102942..18102989 | 719..766 | 225 | 97.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:07:03 has no hits.
FMO07894.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:26:43 Download gff for
FMO07894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf8-RA | 81..846 | 1..766 | 99 | == | Plus |
| Taf8-RA | 847..1070 | 803..1026 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:22 Download gff for
FMO07894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf8-RA | 83..848 | 1..766 | 99 | == | Plus |
| Taf8-RA | 849..1072 | 803..1026 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:36:15 Download gff for
FMO07894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf8-RA | 83..848 | 1..766 | 99 | == | Plus |
| Taf8-RA | 849..1072 | 803..1026 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:36:15 Download gff for
FMO07894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18102052..18102207 | 1..156 | 98 | -> | Plus |
| X | 18102268..18102702 | 157..591 | 100 | -> | Plus |
| X | 18102758..18102886 | 592..720 | 100 | == | Plus |
| X | 18102949..18103213 | 762..1026 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:22 Download gff for
FMO07894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17996791..17996919 | 592..720 | 100 | == | Plus |
| arm_X | 17996085..17996240 | 1..156 | 98 | -> | Plus |
| arm_X | 17996301..17996735 | 157..591 | 100 | -> | Plus |
| arm_X | 17996982..17997246 | 762..1026 | 97 | | Plus |
