FMO07906.5prime Sequence
704 bp (704 high quality bases) assembled on 2009-09-01
> FMO07906.5prime
CAGTCGACATGAAGTTACTTGAAAGTTCACGTTTTGAGGCTATCAACAAC
GCTCTTTCTATACAAACAAGTGGCATCACGATTTTTGGACGGATAGAAAG
TTACTCATGCAAAATGGTTGCGGCCGAGAAAGTATTGTATAAACGATTTA
CAGCAGATTCTCATGGGCATGACCTTCAGGCGTTATCACCTCCACAAACT
TTGGCTGACTTTTCACCAAACTTTCGTCGAAACAACAGTCAATCTGGAGA
TGAAGGCATTACTCTTTGCGATACCATTTCCAGAAAAACATTATTTTATT
TAATTGCTACTTTAAATGCGTCTTTTGAACCAGACTACGATTTTTCTGAA
GCAAAGTCCCATGAATTTAGCAAAGAGCCGTCATTGCAGTGGGTTATGAA
CTCAATCCATGCAAATTTATCGGCATTAGCGGGAGATCAGTATCAAGCTA
TACGTCAACCATTATGGTCTGCAGTTGACGACGAAGTGATCCTATCAGAG
TGTGACATATACAGTTATAATCCAGATCTAAGTTGCGATCCTTTTGGCGA
ACCAGGCTGCTTGTGGTCATTTAATTATTTCTTTTATAATAAGAAATTAA
AACGAATTGTTTTTTTTACAAGTCGAGCAGTGAATTCTCTTTACGCCGGT
GAAACCTTACCCTTTTCGATGGAAGAAGAAGTGTACGCAAGCTTTCTAGA
CCAT
FMO07906.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:55:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Maf1-RE | 1078 | CG40196-RE | 210..888 | 8..686 | 3380 | 99.9 | Plus |
| Maf1-RD | 1102 | CG40196-RD | 307..985 | 8..686 | 3380 | 99.9 | Plus |
| Maf1-RB | 1358 | CG40196-RB | 490..1168 | 8..686 | 3380 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:55:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 1515890..1516171 | 634..353 | 1395 | 99.6 | Minus |
| 2R | 25286936 | 2R | 1516222..1516469 | 356..109 | 1240 | 100 | Minus |
| 2R | 25286936 | 2R | 1516520..1516621 | 109..8 | 510 | 100 | Minus |
| 2R | 25286936 | 2R | 1515785..1515836 | 686..635 | 260 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 18:55:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Quasimodo | 7387 | Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. | 6413..6471 | 620..562 | 123 | 71.7 | Minus |
FMO07906.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:23:35 Download gff for
FMO07906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40196-RB | 252..930 | 8..686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:33 Download gff for
FMO07906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Maf1-RC | 472..1150 | 8..686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:41 Download gff for
FMO07906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Maf1-RB | 490..1168 | 8..686 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:41 Download gff for
FMO07906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 1516222..1516468 | 110..356 | 100 | <- | Minus |
| 2R | 1516520..1516621 | 8..109 | 100 | | Minus |
| 2R | 1515785..1515836 | 635..686 | 100 | <- | Minus |
| 2R | 1515890..1516167 | 357..634 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:33 Download gff for
FMO07906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ArmU | 1092109..1092160 | 635..686 | 100 | <- | Minus |
| ArmU | 1092214..1092491 | 357..634 | 99 | <- | Minus |
| ArmU | 1092546..1092792 | 110..356 | 100 | <- | Minus |
| ArmU | 1092844..1092945 | 8..109 | 100 | | Minus |
