FMO07908.5prime Sequence
749 bp (749 high quality bases) assembled on 2009-09-01
> FMO07908.5prime
CAGTCGACATGAATGCAACGTTCCATTCATACAGAGACATACTAGCGGCA
CATCACCAAGACTCATCTAGTCCTGAGAACTTCGCCCCCATAGTAATTGA
CTATAGAAACTCAAACCACACAAAGGACACTGTGGAGACCAACTCGAATA
TCTCATCGTCTCAGCTATCGTTCATGGACGAATCTTCAAACGATTTCAAT
AATCAGCAGTTAATTCATTCCAACTCCCTTATTAAAGTGTGTGGTGGTTG
TGGAGATAAAATAAGTGATAGATATCTTTTATACGCTTTGGACAGATACT
GGCACAATGGCTGCCTTAAATGTCACTGCTGTGGAGCTATGCTAGCAGAA
GTGGGTTCCAGCTGTTTTACGAGGCGAGGCCTGATTCTTTGCAAAAAGGA
CTATTCCAGCATGTTCGGGTGCTCCGGAGTTTGTTCTGGCTGCGGAGAAA
CTATACCGCCAAGTGAACTGGTAGCGAAAGCACTTACTGGAATAAATAAT
ATCGATTTACAAAATCAACAAAAACAAATAATTAATTGCGTATTTCATCT
AAGGTGCTTTAGTTGTGCTAAGTGTGGATCCAGTCTGCGTCCTGGTGATA
GGTATACTATGTTAGGAGCTAGCTTGGTGTGTGAACAAGATTGGCACAAA
TTACTTAAGGGCCCCGCCAACTCGAATGGAACGCTTGGACAAAGGAAAGG
AAAGGTCGGTAGGCCCAGAAGATCAAAGGACGCAAGCTTTCTAGACCAT
FMO07908.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:17:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5708-RC | 1326 | CG5708-RC | 298..1020 | 9..731 | 3615 | 100 | Plus |
| CG5708-RB | 1036 | CG5708-RB | 206..928 | 9..731 | 3615 | 100 | Plus |
| CG5708-RA | 1128 | CG5708-RA | 298..1020 | 9..731 | 3615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:17:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10225500..10225750 | 259..9 | 1240 | 99.6 | Minus |
| 2L | 23513712 | 2L | 10224954..10225155 | 605..404 | 1010 | 100 | Minus |
| 2L | 23513712 | 2L | 10225279..10225434 | 409..254 | 780 | 100 | Minus |
| 2L | 23513712 | 2L | 10224763..10224894 | 731..600 | 660 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:17:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Doc | 4725 | Doc DMW1DOC 4725bp Derived from X17551 (g8821) (Rel. 29, Last updated, Version 2). | 4687..4724 | 491..528 | 109 | 76.3 | Plus |
FMO07908.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:19:15 Download gff for
FMO07908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5708-RB | 206..931 | 9..735 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:13 Download gff for
FMO07908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5708-RA | 298..1023 | 9..735 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:31 Download gff for
FMO07908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5708-RA | 298..1023 | 9..735 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:31 Download gff for
FMO07908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10224760..10224892 | 602..735 | 98 | <- | Minus |
| 2L | 10224958..10225149 | 410..601 | 100 | <- | Minus |
| 2L | 10225279..10225432 | 256..409 | 100 | <- | Minus |
| 2L | 10225504..10225750 | 9..255 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:13 Download gff for
FMO07908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10224760..10224892 | 602..735 | 98 | <- | Minus |
| arm_2L | 10224958..10225149 | 410..601 | 100 | <- | Minus |
| arm_2L | 10225279..10225432 | 256..409 | 100 | <- | Minus |
| arm_2L | 10225504..10225750 | 9..255 | 100 | | Minus |
