FMO07909.5prime Sequence
1156 bp (969 high quality bases) assembled on 2009-09-01
> FMO07909.5prime
CAGTCGACATGTCGAAACTCATCCGTTGGGGAATCGCTTCCGCCGGCAAG
ATCAGCGAGGACTTTGTCATCGCCCTCAGCACCCTGCCCTCCAGCGACCA
CAAGGTCCAGGCTGTAGCCGCCCGAGCTCTTGATCGCGCCCAGGAGTTCG
CCACCAAGCACGGCATTCCCAAGGCCCTCGGAAGCTACGAGGAGCTGGCC
AAGAGCACCGATGTCGATGTGGTCTACATTGGCACCCTGAATCCCCAGCA
CTACGAGGTCGCCTTGCTGATGCTGAACAATGGCAAGCATGTTCTCTGCG
AGAAGCCGTTGGCCATGAACAAGAAGCAGGTGGAGGGCATCCTGGCCGCT
GCCAAGGCCAACAAGCGCTTCTTCATGGAGGCCGTGTGGTCGCGATTCTT
CCCCTCGTACCAGCGCGTTAAGGAGCTCATCTCCAGCGGACAGCTGGGCC
AAGTCAAGGATGTGGAGGTCAACTTTGGCTTCCCTATGCCTCATGTCGAC
CGCTTGCAGAAACGCGAACTGGGAGGCGGTGTGGTCTACGATCTGGGCAT
TTACACCATCCAGGTCTCGCAGTGGGCCTTCCAGGAGAAACCGGAGAAGA
TCGAGTCCAAGGGAACCCTGAACGCCGAGGGCATCGACGATGATGTTAGT
GCCACCTTGACCTACAGTGGTGGGCGCACTGCTCGCATGCGCTTCTCCTC
CAAGGAGAAGTTGGGAAACACCGCCGTTATCAAGGGCACCAAAGGACAAG
TTACCCTGATTGACTTCTGGTCGCCCAACAAGCTTATCGACATCGATGGC
CAGGAGAAAGGAGTGGCTGCCTCCCAGGGGCAAGTACGCGACAAACTACG
CCAACTCCGAGGGCCATGCGCTATGAGGCGGAAGCAGTGCGCAGTCCCAT
CATCGCCGGGCGAAGTGGAAGAACAAGAACGTCACCTTACGCCGACAGTT
TTGATCTTCGCCGAAATCGAGGACCCCATCCGCAAGCTGATCGGGTGTGC
CTGAACAAGTACGATGGAGCAGGCAAGCTTTCCTAGAACCATTTCGTTTG
GGCCCGCCGGGCCCAGGTAAGTGGTCATTATCATATCTCATATCATAATC
CATATCCCAATCTAGACCAGGGAGAATTCTGGGTCAGACATAGTGCCTGG
AATTCC
FMO07909.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3609-RC | 1210 | CG3609-RC | 146..1152 | 7..1022 | 4705 | 98.2 | Plus |
| CG3609-RB | 1099 | CG3609-RB | 35..1041 | 7..1022 | 4705 | 98.2 | Plus |
| CG3609-RA | 1223 | CG3609-RA | 159..1165 | 7..1022 | 4705 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2373133..2373426 | 509..216 | 1470 | 100 | Minus |
| 2L | 23513712 | 2L | 2372830..2373076 | 755..509 | 1235 | 100 | Minus |
| 2L | 23513712 | 2L | 2373494..2373703 | 216..7 | 1050 | 100 | Minus |
| 2L | 23513712 | 2L | 2372518..2372770 | 1016..756 | 740 | 92.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:49:34 has no hits.
FMO07909.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:19:14 Download gff for
FMO07909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3609-RA | 38..1052 | 1..1026 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:15:10 Download gff for
FMO07909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3609-RA | 154..1168 | 1..1026 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:08 Download gff for
FMO07909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3609-RA | 154..1168 | 1..1026 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:08 Download gff for
FMO07909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2372509..2372770 | 756..1026 | 92 | <- | Minus |
| 2L | 2372830..2373076 | 509..755 | 100 | <- | Minus |
| 2L | 2373134..2373425 | 217..508 | 100 | <- | Minus |
| 2L | 2373494..2373708 | 1..216 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:15:10 Download gff for
FMO07909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2372509..2372770 | 756..1026 | 92 | <- | Minus |
| arm_2L | 2372830..2373076 | 509..755 | 100 | <- | Minus |
| arm_2L | 2373134..2373425 | 217..508 | 100 | <- | Minus |
| arm_2L | 2373494..2373708 | 1..216 | 99 | | Minus |
