Clone FMO07911 Report

Search the DGRC for FMO07911

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:79
Well:11
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCks30A-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO07911.5prime Sequence

248 bp (248 high quality bases) assembled on 2009-09-01

> FMO07911.5prime
CAGTCGACATGAGCAAGGACATTTACTACTCCGACAAGTACTACGATGAG
CAGTTCGAGTACAGACATGTGGTTTTGCCAAAAGAGCTGGTAAAAATGGT
GCCCAAGACTCATCTGATGACGGAGGCCGAGTGGCGATCAATTGGCGTAC
AGCAGTCGCGCGGATGGATCCACTACATGATCCATAAGCCGGAGCCCCAC
ATCCTCCTGTTTCGGCGACCCAAAACGGATGCAAGCTTTCTAGACCAT

FMO07911.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:20
Subject Length Description Subject Range Query Range Score Percent Strand
Cks30A-RA 1147 CG3738-RA 293..514 9..230 1110 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9331179..9331348 61..230 850 100 Plus
2L 23513712 2L 9331055..9331110 9..64 280 100 Plus
Blast to na_te.dros performed on 2014-11-28 18:59:20 has no hits.

FMO07911.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:23:41 Download gff for FMO07911.5prime
Subject Subject Range Query Range Percent Splice Strand
Cks30A-RA 281..510 1..230 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:45 Download gff for FMO07911.5prime
Subject Subject Range Query Range Percent Splice Strand
Cks30A-RA 285..514 1..230 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:57 Download gff for FMO07911.5prime
Subject Subject Range Query Range Percent Splice Strand
Cks30A-RA 285..514 1..230 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:57 Download gff for FMO07911.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9331047..9331110 1..64 95 -> Plus
2L 9331183..9331348 65..230 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:45 Download gff for FMO07911.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9331183..9331348 65..230 100   Plus
arm_2L 9331047..9331110 1..64 95 -> Plus