FMO07912.5prime Sequence
1134 bp (965 high quality bases) assembled on 2009-09-01
> FMO07912.5prime
CAGTCGACATGTCAGCATTTGAACTGAAAAATTTAAATGATTGCTTGGAA
AAGCATTTACCACCCGATGAACTAAAGGAGGTTAAGAGAATTTTGTACGG
CGTAGAAGAAGATCAAACGCTTGAGCTGCCCACAAGTGCGAAAGATATTG
CCGAACAGAATGGATTCGACATCAAGGGCTATCGCTTCACGGCGCGAGAG
GAGCAAACTCGCAAGCGCCGGATAGTCAGAGTTGGCGCCATCCAAAACTC
TATCGTAATCCCTACTACGGCGCCCATTGAAAAACAACGAGAGGCCATCT
GGAACAAAGTGAAGACTATGATCAAGGCGGCAGCGGAAGCCGGATGCAAC
ATTGTTTGCACCCAAGAAGCGTGGACCATGCCCTTTGCCTTCTGCACTCG
CGAGAAGTTTCCTTGGTGTGAGTTTGCCGAAGAAGCCGAAAACGGTCCCA
CAACCAAGATGCTCGCAGAGCTGGCCAAGGCTTACAACATGGTTATCATC
CACTCGATTCTGGAGCGAGATATGGAGCATGGCGAGACCATTTGGAATAC
GGCAGTGGTCATCTCGAACAGTGGTCGCTACCTGGGCAAGCACCGCAAGA
ACCACATTCCCCGGGTGGGTGACTTCAATGAGTCCACCTACTACATGGAG
GGGAACACCGGTCATCCGGTTTTCGAGACGGAGTTCGGCAAGCTGGCTGT
GAACATATGCTACGGGCGCCATCACCCACAGAACTGGATGATGTTCGGTC
TGAATGGAGCCGAGATTGTCTTTAATCCCTCGGCTACGATCGGCCGCCTA
TCGGAGCCATTGTGGAGCATTGAGGCACGTAACGCTGCCATCGCCAATAG
CTACTTTACGGTTCCGATTAATCGCGTGGAACCGAGCAGTTCCCGAACGA
TACACATTCTGGTGATGGCAACAAAGGCGCATAAGAGTTGGTTCCCTTCT
ACGGATCTTCTATTGTCCGCAGCTCCTGACGGCTCAAGAACACCGAGCTT
ATCGCGGGGACAAAGACGGCTTGCTTGTCGTTGAACTTCGAATCTGAACC
TGTGTTCGCAGGTGAAGAACTTCCTGGGGGCTTCCGCATGAACGCAAAAA
GAGTTTCCGCTGGTATTGCGGAGTCCTTTCCAAA
FMO07912.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pyd3-RA | 1361 | CG3027-RA | 94..1202 | 9..1128 | 5050 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7748254..7748873 | 995..376 | 2740 | 98.2 | Minus |
| 3R | 32079331 | 3R | 7748950..7749212 | 375..113 | 1315 | 100 | Minus |
| 3R | 32079331 | 3R | 7749883..7749986 | 112..9 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:29:54 has no hits.
FMO07912.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:23:40 Download gff for
FMO07912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pyd3-RA | 91..1200 | 9..1131 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:11 Download gff for
FMO07912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pyd3-RA | 94..1203 | 9..1131 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:31 Download gff for
FMO07912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pyd3-RA | 94..1203 | 9..1131 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:31 Download gff for
FMO07912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7748254..7748873 | 376..995 | 98 | <- | Minus |
| 3R | 7748950..7749212 | 113..375 | 100 | <- | Minus |
| 3R | 7749883..7749986 | 9..112 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:11 Download gff for
FMO07912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3573976..3574595 | 376..995 | 98 | <- | Minus |
| arm_3R | 3574672..3574934 | 113..375 | 100 | <- | Minus |
| arm_3R | 3575605..3575708 | 9..112 | 100 | | Minus |
