FMO07914.5prime Sequence
1073 bp (905 high quality bases) assembled on 2009-09-01
> FMO07914.5prime
CAGTCGACATGGGCGAACAACCGATTTTCACCTGCCAGGCGCACGTCTTC
CACATCGATCCGAAGACGAAGCGCACCTGGATCACGGCCAGCATGAAGGC
GGTCAACGTTAGCTTCTTCTACGACAGCTCGCGAAATCTGTACCGCATCA
TCAGTGTCGAGGGCACCAAGGCGGTGATAAACTCGACGATCACACCCAAC
ATGACCTTCACCCAGACCTCCCAGAAGTTCGGCCAGTGGAGCGATGTGCG
GGCAAACACGGTGTACGGCTTGGGATTTGCCTCAGAGGCGGAATTGACCA
AGTTCGTAGAGAAGTTCCAGGAGGTCAAGGAGGCCACCAAGAATGCCATG
AAATCGGCCAACGGATCGAATGCCGTCACGCCCACCACCTCGGCGAACAC
GTCGCCCATTTCCGGGAGAGCTGTGGGCTCCATGCAGAACGACAACACAG
CCATCGATCCGCACACTGTGGAGCCGCCCAACATGAGCAACACGAATACC
CAGAACGCCAATCCGGACAGTCCTTCCCACAAGCTTCTAAATACCAGCGA
TGTCAAGGCGGACATCGGATCGGCCACGCCCTCGCCGCAGCCCACTTCAG
GGGTAACTGGTGGCGGTGGAGTGACCATCTCGTCTGGCGGAAGCATTGTG
GGCATGCACACGGGTCCTGGAGCCGGCGCCACCGCCGAGCAGCAGCTTAA
GTACGAGAACGAGCGTCTGAAAATGGCACTGGCACAAAGCTGCGCCAATG
CCAGAAATGGGAAATCGAGCTGGCTACCTTGAAAACAACAATATACGGCT
GACTAGTGCTCTTCAGAATCAACTGCCAATGTAGACGAATGGAAGCCGCA
GCTGCACACTTACAGAGGAGAATATTCGCCTCAAACCAGATATGGAGCAG
CTGTGCGTTGGGCGGCGGGGTTGTGCTGCAGCCGGAGAGCGCCACGAGGA
CGAACTGCGTCGTGGAGGTGGCCAGCTCAGCCGACGAACACTACGAGACT
AGCAAGACTGAACTAGTCGGCAATTAGCTACTGAAGTCATGACAACCTGC
AGTGATTGAGTGATGGTGGTTGC
FMO07914.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| homer-RE | 1921 | CG11324-RE | 163..1141 | 9..979 | 4570 | 98.5 | Plus |
| homer-RD | 2923 | CG11324-RD | 163..1141 | 9..979 | 4570 | 98.5 | Plus |
| homer-RA | 1921 | CG11324-RA | 163..1141 | 9..979 | 4570 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6721650..6722088 | 739..301 | 2195 | 100 | Minus |
| 2L | 23513712 | 2L | 6722142..6722431 | 302..13 | 1450 | 100 | Minus |
| 2L | 23513712 | 2L | 6721301..6721454 | 964..816 | 435 | 92.9 | Minus |
| 2L | 23513712 | 2L | 6721518..6721598 | 816..738 | 305 | 97.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:49:26 has no hits.
FMO07914.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:19:10 Download gff for
FMO07914.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| homer-RC | 159..1144 | 9..986 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:15:05 Download gff for
FMO07914.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| homer-RA | 163..1148 | 9..986 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:05 Download gff for
FMO07914.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| homer-RA | 163..1148 | 9..986 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:05 Download gff for
FMO07914.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6721279..6721454 | 817..986 | 91 | <- | Minus |
| 2L | 6721518..6721596 | 740..816 | 97 | <- | Minus |
| 2L | 6721650..6722086 | 303..739 | 100 | <- | Minus |
| 2L | 6722142..6722431 | 13..302 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:15:05 Download gff for
FMO07914.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6721279..6721454 | 817..986 | 91 | <- | Minus |
| arm_2L | 6721518..6721596 | 740..816 | 97 | <- | Minus |
| arm_2L | 6721650..6722086 | 303..739 | 100 | <- | Minus |
| arm_2L | 6722142..6722431 | 13..302 | 100 | | Minus |
