FMO07928.5prime Sequence
992 bp (992 high quality bases) assembled on 2009-09-01
> FMO07928.5prime
CAGTCGACATGACCGACGAGTGCGTAACCAGAAACTACGGAGTAGGCATT
CGCAGCCCAAATGGATCGGAAAATCGGGGCAGCTTTATAATGGCTGATAA
TACCGATGCCAAGGGCTGTACGCCGGAGTCTCTTGTTGTTGGTGGTGCAA
CTGCAGCGAGCCCCTTGCCGGCCAACAAGTTTGTGGCTCGAATGCCCGTG
GAACGATATGCAAGCGAATACAACATGAGTCACAAGCACCGCGGAGTTGC
GCTGATCTTCAACCACGAATTCTTCGACATACCCTCGCTGAAGAGCCGCA
CCGGAACAAATGTCGATGCCCAAGAGCTGAAAAAGGCCTTTGAAAACCTG
GGATTCGCGGTGTCCGTGCACAAGGACTGCAAGTTGAGGGACATCCTGAA
GCACGTGGGGAAGGCCGCCGAGTTGGACCACACGGACAACGACTGCCTTG
CGGTGGCCATACTCTCGCACGGGGAGCACGGCTACCTGTACGCCAAGGAT
ACGCAGTACAAGCTGGACAACATCTGGCACTACTTCACTGCCACCTTCTG
CCCCTCGCTGGCAGGCAAGCCGAAGCTGTTCTTCATCCAAGCCTGCCAGG
GCGATCGCTTGGACGGAGGCATCACTCTGGAGAAGGGCGTTACCGAGACG
GACGGGGAGTCCTCGACGAGCTACAAGATACCCATACACGCCGACTTTCT
CTTCTCCTACTCGACCATTCCGGGCTACTTCTCCTGGCGCAACATCAACA
ATGGCTCCTGGTACATGCAATCGCTGATCCGCGAGCTGAACGCCAATGGC
AAAAAGTACGACCTGCTCACCCTGCTTACATTCGTTAACCAGCGCGTAGC
CCTAGACTTTGAGTCGAACGTGCCCGCCACACCGATGATGGATCGCCAGA
GCAAATACCGTGCCTCACCTCCATGCTGACGCGCATACTGCGCTTCGGCG
ACAGCCGAACGGCAATAAGCTGGCGCAAGCTTTCTAGACCAT
FMO07928.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dcp-1-RA | 1749 | CG5370-RA | 411..1379 | 9..974 | 4755 | 99.6 | Plus |
| Drice-RA | 1927 | CG7788-RA | 729..1231 | 452..953 | 555 | 74.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23552299..23552864 | 159..724 | 2815 | 99.8 | Plus |
| 2R | 25286936 | 2R | 23552923..23553171 | 723..969 | 1145 | 99.2 | Plus |
| 2R | 25286936 | 2R | 23551723..23551874 | 9..160 | 760 | 100 | Plus |
| 3R | 32079331 | 3R | 29800386..29800888 | 452..953 | 530 | 74.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:42:31 has no hits.
FMO07928.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:19:03 Download gff for
FMO07928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dcp-1-RA | 403..1377 | 1..974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:44 Download gff for
FMO07928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dcp-1-RA | 405..1379 | 1..974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:22 Download gff for
FMO07928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dcp-1-RA | 405..1379 | 1..974 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:22 Download gff for
FMO07928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23551717..23551874 | 1..160 | 97 | -> | Plus |
| 2R | 23552301..23552863 | 161..723 | 99 | -> | Plus |
| 2R | 23552924..23553177 | 724..974 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:44 Download gff for
FMO07928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19439240..19439397 | 1..160 | 97 | -> | Plus |
| arm_2R | 19439824..19440386 | 161..723 | 99 | -> | Plus |
| arm_2R | 19440447..19440700 | 724..974 | 98 | | Plus |
