FMO07930.5prime Sequence
1145 bp (1037 high quality bases) assembled on 2009-09-01
> FMO07930.5prime
CAGTCGACATGCGAATAGTTATTGGATCGTTCACCGCATTTCTTTTGCTG
TTATTGCAAAACTCAAATGCCGAAATTCCCGGTTGCGACTTCTTCGACAC
CGTAGATATTTCAAAAGCGCCAAGATTCTCGAACGGATCGTACCTCTACG
AAGGCTTGCTGATCCCCGCCCATTTGACAGCTGAATATGACTACAAGCTC
CTGGCCGACGATTCGAAGGAGAAGGTGGCGAGCCACGTACGAGGATGTGC
CTGCCACCTCAGGCCATGCATTCGGTTTTGTTGCCCCCAGTACCAAAAGA
TGCAAAAGAGCAAGTGCTACGGCGACATGTCGGAGGACGAGCTGAACAAG
CACGATCCCTTCGTGAACGTGACGCTCAGCGACGGGTCGGTGGTCAGGAG
ACACTTCAAGGAGGATCTGATCGTGCAGTCGGATCTGGCCAAGCCCGGAT
GTCCCCGGATGTACTTTCTGAATCACGAACTGCCGGGCAATGAATTCACT
CTGTTTGAGAACGGCTCTCTTCTGCGTCACTGGGACAAAGTGGAACTGAG
CAAGCGGGAGTACTGCGTCCAGCATCTTTCATTTAAGGATGATAGTATCC
GAATTGCACCCCACTTCTGTCCACTTTCGTCTGAGCACTCCAGAACGTGG
AAGACCGTTGCGATAGTGATATCCTTGATATGCATAATCCTAACGATCAG
CGTGTACCTCTATGTTGAGAAGCTTCGCAACCTGCACGGAAAGTGTTTCA
TCTGCTACTTGGCCTCCTTGTTCCTGGGATATTTCTTCCTGGTCCTCAAC
GTGTGGAAATACTCCTCCGGCTTCTGCGTTACAGCAGGTTCCTGGGCTAC
TTCTCCGTCATCGCCGCGTTCTTTTGGCTTTCTGTCATCAGTCTTACCCT
CTGGAATTCATTTAGCGGCACTCCAGCTGGTTGAACCGTTTCTTGCCACA
GATCGGTTCTTTCTTACAATTTATACGGCTGGGGCATGGCGCTGCTCTGA
CTGCAATCACCTATATAGCTGACCAGGTGGTTAAGAACGAAAAGTTGAGA
CCCCGCGGTGGGGCGTCGGCAAAATGGTGGATCTACACTGGGGGAATTGA
CTTTCATGAATCAACTCCTATGGCCGATGCTACTGAATATGGTTT
FMO07930.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mthl3-RC | 2047 | CG6530-RC | 212..1343 | 9..1136 | 5270 | 98.2 | Plus |
| mthl3-RB | 2296 | CG6530-RB | 461..1592 | 9..1136 | 5270 | 98.2 | Plus |
| mthl3-RA | 1985 | CG6530-RA | 150..1281 | 9..1136 | 5270 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17450529..17451029 | 509..9 | 2505 | 100 | Minus |
| 2R | 25286936 | 2R | 17446737..17447210 | 509..36 | 2235 | 98.1 | Minus |
| 2R | 25286936 | 2R | 17450083..17450263 | 840..660 | 905 | 100 | Minus |
| 2R | 25286936 | 2R | 17449784..17450023 | 1074..837 | 900 | 96.3 | Minus |
| 2R | 25286936 | 2R | 17446291..17446471 | 840..660 | 845 | 97.8 | Minus |
| 2R | 25286936 | 2R | 17446527..17446679 | 660..508 | 765 | 100 | Minus |
| 2R | 25286936 | 2R | 17450319..17450471 | 660..508 | 765 | 100 | Minus |
| 2R | 25286936 | 2R | 17445992..17446231 | 1074..837 | 305 | 78.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:47:23 has no hits.
FMO07930.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:19:02 Download gff for
FMO07930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl3-RA | 90..1236 | 1..1145 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:44 Download gff for
FMO07930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl3-RA | 144..1290 | 1..1145 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:24 Download gff for
FMO07930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl3-RA | 144..1290 | 1..1145 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:24 Download gff for
FMO07930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17449769..17450023 | 838..1087 | 95 | <- | Minus |
| 2R | 17450086..17450262 | 661..837 | 100 | <- | Minus |
| 2R | 17450319..17450469 | 510..660 | 100 | <- | Minus |
| 2R | 17450529..17451035 | 1..509 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:44 Download gff for
FMO07930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13337274..13337528 | 838..1087 | 95 | <- | Minus |
| arm_2R | 13337591..13337767 | 661..837 | 100 | <- | Minus |
| arm_2R | 13337824..13337974 | 510..660 | 100 | <- | Minus |
| arm_2R | 13338034..13338540 | 1..509 | 99 | | Minus |
