FMO07931.5prime Sequence
1125 bp (1032 high quality bases) assembled on 2009-09-01
> FMO07931.5prime
CAGTCGACATGTCCACCGCCTTCCTTACCCTCATCGCCGTCATCGTGTGC
ATCCTGTTCCGCATCCTTAATGTTCACAGCCAGCCGCTGAAGCCCAGTGT
GTGGTGCCTTGATGCCCACTTCCTCGACTGCCTCTACAAGATCGCGCCCG
TCCTAAGGGAACCATACATTCCCCCGCGACTTTGGGGCTTTAGTGGCCAT
GTGCAGACGGTCTTGCACAGCATTGTTGGCCGGGTACGATGTCCCTGGCC
ACTCGGAGAACGTGTTTACATGTCGCTAAAGGATGGCTCCACATTGACCT
ACGACTTGTACCAGCCACTCAACGAACAGGAGGATGACATCACGGTGGCC
ATTTGCCCGGGCATCGCCAACAGCTCGGAATCGGTGTACATTCGCACCTT
CGTGCACTTGGCCCAGTGCAATGGATACCGCTGTGCGGTGCTAAATCACA
TTGGCGCACTGCGCAGTGTCCAGGTGACCTCCACACGCATTTTCACCTAC
GGCCACACGGAGGATTTCGCGGCCATGGTAGAGCATTTGCACCAGAAGTA
CCGCCAAAGTCGAATTGTCGCGGTTGGTTTCAGTCTGGGCGGCAATCTGG
TCACCAAGTACATGGGCGAGGACCAGAAGACAAAGCCAGACAAGGTCATT
GGAGGCATATCCATATGTCAAGGCTACAATGCCGTCGAAGGCACCAAGTG
GCTGCTCAACTGGCAGAATTTCCGCCGCTTTTACCTATACATCATGACTG
AGAACGTAAAGAGCATTATCCTGCGACATCGACATATCCTCCTGTCCGAC
GAGGTCAAGGCTCGGCATAATCTCAACGAGCGCGAAATCATCGCGGCTGC
CACTCTGCCCGAGTTGGATGAGGCTTACACGCGGAGAGTGTACACTTTCC
CTCCACCCAGGAGTTGTACAGTGGAGCTCGTCGCTGTTTACTTCGATACG
ATCAGAGGCAATGATCTTCATCACGCCAAGATGATCCCTTGATCCCGGAG
ATTGCTGCATCCATCAGGAGTATGCCACGACGCGTCAAACACCGCCTATG
TGGAGGTGGCCATGGCGGTCATCTGACTTCATAGAAGGCGCTTCTGTAAC
CGATCGGTCACTTGCTTGAACGTAC
FMO07931.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hydr2-RB | 2733 | CG3488-RB | 275..1355 | 8..1075 | 5065 | 98.7 | Plus |
| Hydr2-RA | 2259 | CG3488-RA | 275..1355 | 8..1075 | 5065 | 98.7 | Plus |
| Hydr2-RC | 2383 | CG3488-RC | 555..1479 | 164..1075 | 4285 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3167203..3167558 | 333..688 | 1780 | 100 | Plus |
| 2L | 23513712 | 2L | 3167624..3167942 | 689..1000 | 1250 | 97.2 | Plus |
| 2L | 23513712 | 2L | 3166970..3167139 | 164..333 | 850 | 100 | Plus |
| 2L | 23513712 | 2L | 3163919..3164074 | 8..163 | 780 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:50:15 has no hits.
FMO07931.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:19:00 Download gff for
FMO07931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3488-RA | 264..1369 | 1..1090 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:24 Download gff for
FMO07931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hydr2-RA | 266..1371 | 1..1090 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:42 Download gff for
FMO07931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hydr2-RA | 266..1371 | 1..1090 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:42 Download gff for
FMO07931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3163910..3164074 | 1..163 | 97 | -> | Plus |
| 2L | 3166970..3167139 | 164..333 | 100 | -> | Plus |
| 2L | 3167204..3167558 | 334..688 | 100 | -> | Plus |
| 2L | 3167624..3167973 | 689..1027 | 96 | -> | Plus |
| 2L | 3168035..3168087 | 1028..1077 | 92 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:24 Download gff for
FMO07931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3163910..3164074 | 1..163 | 97 | -> | Plus |
| arm_2L | 3166970..3167139 | 164..333 | 100 | -> | Plus |
| arm_2L | 3167204..3167558 | 334..688 | 100 | -> | Plus |
| arm_2L | 3167624..3167973 | 689..1027 | 96 | -> | Plus |
| arm_2L | 3168035..3168087 | 1028..1077 | 92 | -> | Plus |
