Clone FMO07939 Report

Search the DGRC for FMO07939

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:79
Well:39
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG11686-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO07939.5prime Sequence

236 bp (236 high quality bases) assembled on 2009-09-01

> FMO07939.5prime
CAGTCGACATGCCAAATCCACTGTGGTTCGTCTTCTGGCTGCTGGTCTTC
TGGTTCGTCTCCTTCTTCGTGGCATTCTTCTGCGCCTTTTTCTACATCTG
GGTCTACGCATTTGCCTCCTGCATTCCCGCCCTGACGGGCATATCGGACA
TTCTGCTCCAGGGAGTCCAGTTCCCGTTCTACTGCGGGAAAGCCATGTTA
GAGGGCAAGCAAGCTTTTGCAAGCTTTCTAGACCAT

FMO07939.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG11686-RB 487 CG11686-RB 169..378 9..218 1050 100 Plus
CG11686-RA 419 CG11686-RA 101..310 9..218 1050 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13261642..13261771 9..138 650 100 Plus
3R 32079331 3R 13262037..13262118 137..218 410 100 Plus
Blast to na_te.dros performed on 2014-11-28 23:02:23 has no hits.

FMO07939.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:18:57 Download gff for FMO07939.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11686-RA 93..313 1..223 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:23 Download gff for FMO07939.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11686-RA 94..314 1..223 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:36 Download gff for FMO07939.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11686-RA 94..314 1..223 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:36 Download gff for FMO07939.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13261635..13261770 1..137 97 -> Plus
3R 13262038..13262122 138..223 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:23 Download gff for FMO07939.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9087357..9087492 1..137 97 -> Plus
arm_3R 9087760..9087844 138..223 97   Plus