FMO07940.5prime Sequence
967 bp (967 high quality bases) assembled on 2009-09-01
> FMO07940.5prime
CAGTCGACATGATTGAAGTCGACGATCAAATAACGAAGCCCCTGAACTTG
GCCAACTCGGCCGTTCTGCGCGCCGTCGAAGAGGAAGAACAACAAGCCAA
ATGTGGCTACAAGCGTGTGGCCTGGCCACCGGCCTCCGAGGAGCGGATCA
TCCGGGAGTTCACCCCCCAGCCGCAGACTCAGAGTCCGGCTCCCGGTGCC
GGAGGCTACTATCCGCAGGCCCACGCTCCCACAGCAGCAGCTGCCGCTCC
ACCTCAGCAGCAGTACGGTGCTCCGTCTTACGATGGCCAGCAGCCTGGAG
CACAGTGGCAACAGCAACAGCAGCAGCAGCAGGTTCCGCAGCAGCAGTAT
CAGCCTCAATCGCAGGCTCAGGCGCCCTATCAGCCACCACAGTGGAACCA
GCCGCAGCAGCAGCAGCAGCAGCCATCGTACCAGGCTTCACCGTACCAAC
AGCAGCAACAGCAACAGCCATCCTATTACCCACAGCAAAATGGTGGCTCG
ACCTATGCTCAACCCCCATACAATTCTTATTCGCAGCCCCAGTTGCCCTA
CTCGCAGGATCAGACTGATCTGCAGCAGCAGCAACAACAGCAGCAGCAGC
AGTATCCGGGAGCCTACGCTGGCCAGGATAGCTACCGGGGCGCCAGTCCC
GGCATCATCACCCTGCGCAAGGAGGCTCCAGTCAGCCAGAAGCCTGCACC
AGTCTACACTTCGCAGCCAGCCGCCGTCAGTTATCAGGGAGGCAGCAAAT
TGCGCGGAGATTTGAAATGGCCACCACCGGAGTACAAGGAGGCCGCGGCT
CGCGAGAACGAGGAACGACGCCAGTTGGCGTTGGGTCCCGTCTGCCGTCC
CAGGAGAGTTAACCGGGACTACACACCCTTCTTTGCCAAGCACCAGTTGA
ACAATGGCTATCCCAGCTACATGTGCCTCCGGCACCCAGCACATTTTCGG
GCAAGCTTTCTAGACAT
FMO07940.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43897-RE | 2515 | CG43897-RE | 240..1183 | 9..950 | 4655 | 99.7 | Plus |
| CG43897-RG | 3056 | CG43897-RG | 783..1724 | 11..950 | 4645 | 99.7 | Plus |
| CG43897-RF | 2799 | CG43897-RF | 526..1467 | 11..950 | 4645 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9832196..9832680 | 255..739 | 2425 | 100 | Plus |
| 3L | 28110227 | 3L | 9830633..9830785 | 105..257 | 765 | 100 | Plus |
| 3L | 28110227 | 3L | 9832738..9832867 | 738..867 | 650 | 100 | Plus |
| 3L | 28110227 | 3L | 9824546..9824641 | 11..106 | 480 | 100 | Plus |
| 3L | 28110227 | 3L | 9832927..9833013 | 866..950 | 320 | 96.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:23:48 has no hits.
FMO07940.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:18:56 Download gff for
FMO07940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33205-RC | 769..1022 | 5..257 | 98 | -> | Plus |
| CG33205-RC | 1463..2165 | 258..959 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:21 Download gff for
FMO07940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43897-RE | 240..1191 | 9..959 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:52 Download gff for
FMO07940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43897-RE | 240..1191 | 9..959 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:52 Download gff for
FMO07940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9824546..9824640 | 11..105 | 100 | -> | Plus |
| 3L | 9830634..9830785 | 106..257 | 100 | -> | Plus |
| 3L | 9832199..9832679 | 258..738 | 100 | -> | Plus |
| 3L | 9832739..9832866 | 739..866 | 100 | -> | Plus |
| 3L | 9832928..9833021 | 867..959 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:21 Download gff for
FMO07940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9817646..9817740 | 11..105 | 100 | -> | Plus |
| arm_3L | 9823734..9823885 | 106..257 | 100 | -> | Plus |
| arm_3L | 9825299..9825779 | 258..738 | 100 | -> | Plus |
| arm_3L | 9825839..9825966 | 739..866 | 100 | -> | Plus |
| arm_3L | 9826028..9826121 | 867..959 | 93 | | Plus |
