FMO07952.5prime Sequence
855 bp (-85 high quality bases) assembled on 2009-09-01
> FMO07952.5prime
CAATCCACATGAAGCCACAAGGAATACCACCGACTACTACACGAATCAGC
CAGACCAAGATGTCCTTTCGCGGCAAGAATGCAGTGGTGACCGGTGGAGC
TGGACGCATTGGACTGCAGGTGTCCAAGCATCTCCTGGCCGCTGGACCAA
CGGTGGCCATCATTGATTTGCACGATAATCTGGAGGAGTTTGTAAAACTT
AGGGCCGCTCATCCCACCCAAAGCGTAATGATCATCAAGATGGATGTGGC
GAACAAGAAGGGTGTGGAAGCCACCTATGAGGAGATAGCCAAGACCTTCG
GTAACATCGATATTGTGGTCAATGTAGCCGGGATTTTTAACGACAAGGAT
GTGCAGAGGACTCTGTTGGTAAATCTCGGTGGAATCATCAATTCCACAAT
GAGTGCATTGCCCTACATGGGCAAGGATAATGGCGGCAAGGGTGGCATTG
TGGTTAACATGAGCTCGGTGGTGGGTCTGGATCCAATGTTCATCATTCCC
GTTTACGGAGCCACCAGGGCTGGCATCATCAACTTCACCCGGTGCTTGGC
GAACGAAAAGTACTATCAACGCTCGGGCATCAAGTTTGTGACTGTTTGTC
CTGGAGCTACAATGACGGACATGTACACCAACTTTACAGACAAGATCATC
TTCCCGGAAACGAGTGACGAGACCTATAGGATCCTGGATAGGCTAAACAA
GCAGAGTGCCGCTGATGTCTCTCGATGCATTCTGAATGTCCTGCAAAGGA
CAAGAACGGATCTGTCTATGTCATCGAGGGTAAGCGCGTTTACCTTTGGA
AATTAAGCCCCAGTGGACTGCCTATGATCACGTCCTTGCAAGCTTTCTAG
ACCAT
FMO07952.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdh-RB | 942 | CG4899-RB | 17..828 | 9..818 | 3830 | 98.3 | Plus |
| Pdh-RA | 945 | CG4899-RA | 17..831 | 9..818 | 3790 | 97.9 | Plus |
| Pdh-RD | 913 | CG4899-RD | 1..799 | 22..818 | 3765 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16353680..16354079 | 551..152 | 1955 | 99.2 | Minus |
| 3L | 28110227 | 3L | 16353347..16353616 | 818..551 | 1175 | 97.4 | Minus |
| 3L | 28110227 | 3L | 16354136..16354281 | 154..9 | 670 | 97.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:52:57 has no hits.
FMO07952.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:21:14 Download gff for
FMO07952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdh-RB | 17..837 | 9..827 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:54:02 Download gff for
FMO07952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdh-RB | 17..837 | 9..827 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:53 Download gff for
FMO07952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdh-RB | 17..837 | 9..827 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:53 Download gff for
FMO07952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16353338..16353615 | 552..827 | 96 | <- | Minus |
| 3L | 16353680..16354078 | 153..551 | 99 | <- | Minus |
| 3L | 16354138..16354281 | 9..152 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:54:02 Download gff for
FMO07952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16346438..16346715 | 552..827 | 96 | <- | Minus |
| arm_3L | 16346780..16347178 | 153..551 | 99 | <- | Minus |
| arm_3L | 16347238..16347381 | 9..152 | 97 | | Minus |
