FMO07956.5prime Sequence
1045 bp (991 high quality bases) assembled on 2009-09-01
> FMO07956.5prime
CAGTCGACATGGCCGCCAAGACGGACGAATCGTCGCCAGCCGTGGCGTCA
AGCACAAGCAGCAATCCCGCTCCCTCCAGCGGACGCCACCAGTTGCGACC
CGTGAAGTTTGACTACGCGGACTCATTCGCCTGCACTTACATCGTTTCCG
TGGTGGCCGCCTCCATTGCAGAGCTCGCGACCTATCCCTTGGACCTGACC
AAGACGCGTCTGCAGATCCAGGGCGAAGGAGCCGCCCATTCGGCGGGAAA
GTCCAATATGCAATACCGCGGCATGGTGGCCACCGCCTTCGGGATTGCGC
GTGAGGAGGGCGCCCTGAAGCTGTGGCAGGGCGTAACGCCGGCGCTCTAC
CGACACGTCGTCTATAGCGGTGTGAGGATCTGCAGCTACGACCTGATGCG
CAAGGAGTTCACACAGAACGGCACCCAGGCTCTGCCGGTTTGGAAGTCGG
CGCTGTGCGGCGTCACGGCCGGAGCCGTTGCCCAGTGGCTTGCCTCGCCC
GCTGACCTCGTCAAGGTGCAAATCCAAATGGAGGGCCGACGACGTCTGAT
GGGCGAGCCACCGAGGGTGCACTCCGCTGGCCATGCCTTCCGCCAGATCG
TGCAGCGTGGCGGAATTAAGGGCCTGTGGAAGGGCAGCATCCCGAATGTG
CAGCGAGCGGCGTTGGTCAATCTGGGCGACCTAACCACATACGACACCAT
CAAGCACCTGATCATGAATCGCCTGCAGATGCCCGACTGTCACACAGTGC
ACGTGCTGGCCTCCGTTTGTGCCGGATTCGTGGCAGCGATCATGGGCACG
CCAGCTGATGTGGTGAAGACGCGCATCATGAACCAGCCCACCGACGAGAA
TGGCCGGGGCCTGCTCTATCGCGGATCCGTGGACTGCCTGCGAAAGACGG
TTTCGAAGAGGGCTTTGTGGGCGCTGTACAAAGGCTTTCTGCCCTGCTGG
ATACGAATGGCGCCGTGATCGCTCCCCTTCTGGCTGTCCTTCGAACAAAT
CCCCAAGATGATCGGAGCCTCGCTACGCAAGCTTTCTAGGACCAT
FMO07956.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ucp4A-RB | 2022 | CG6492-RB | 433..1445 | 9..1021 | 4945 | 99.3 | Plus |
| Ucp4A-RA | 1803 | CG6492-RA | 493..1505 | 9..1021 | 4945 | 99.3 | Plus |
| Ucp4A-RC | 1693 | CG6492-RC | 742..1395 | 368..1021 | 3150 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17846929..17847420 | 366..857 | 2460 | 100 | Plus |
| X | 23542271 | X | 17845510..17845758 | 9..257 | 1245 | 100 | Plus |
| X | 23542271 | X | 17847481..17847646 | 856..1021 | 660 | 95.8 | Plus |
| X | 23542271 | X | 17846683..17846792 | 258..367 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:29:31 has no hits.
FMO07956.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:21:11 Download gff for
FMO07956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ucp4A-RA | 444..1476 | 1..1029 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:52 Download gff for
FMO07956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ucp4A-RA | 483..1512 | 1..1026 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:17 Download gff for
FMO07956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ucp4A-RA | 483..1512 | 1..1026 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:17 Download gff for
FMO07956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17845500..17845758 | 1..257 | 98 | -> | Plus |
| X | 17846683..17846792 | 258..367 | 100 | -> | Plus |
| X | 17846931..17847419 | 368..856 | 100 | -> | Plus |
| X | 17847482..17847653 | 857..1026 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:52 Download gff for
FMO07956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17739533..17739791 | 1..257 | 98 | -> | Plus |
| arm_X | 17740716..17740825 | 258..367 | 100 | -> | Plus |
| arm_X | 17740964..17741452 | 368..856 | 100 | -> | Plus |
| arm_X | 17741515..17741686 | 857..1026 | 94 | | Plus |
