FMO07957.5prime Sequence
1122 bp (1027 high quality bases) assembled on 2009-09-01
> FMO07957.5prime
CAGTCGACATGAAGTCGATGCGCACAGCGACATCGCTGGCTTTGGTCCTG
CTCCTGGCCACCAGCTACGTCCGAGCTGAGGACGAGAAGGCCGCCGCTCC
CGCCGAGGAGAAGAAGGCTGAGCCGGAGGCCAAGGCTGCCGAGGCAGCGG
CTAGCGAGGATACGACCAAGTCGAAGAGAGGACTGCACCACTACGAGGAC
TATCACCATCATCACGTGCCTCACTTCCCGGTGCACGAGGAGAAGACACT
GACCGTCATTAAGAAGGTGCCAGTGCCCGTGCCCATCGAGAAGATCGTAC
ATGTGCCCGTCGAGAAGCACATCCATGTGCCCGTTAAGGTCAAGGTGCCA
AAGCCCTATCCGGTGATCAAACACATTCCCTACGAGGTGAAGGAGATCGT
GAAGGTTCCCTACGAGGTGCCAGCTCCCTATCCCGTCGAGAAGCAGGTCC
ATGTGCCCGTCCATGTGCACTACGACCGACCAGTGCCCGTTAAGGTTCAT
GTGCCCGCTCCCTACCCAGTCGAAAAGAAGGTCCATGTGCCAGTGAAGGT
TCATGTTCCGGCTCCCTATCCAGTCGAAAAGATTGTCCACTACAATGTTG
AGAAACACGTGCACGTCGACAAGCCATATCCCGTGGAGAAGGTTGTCCAC
TACCCGGTGAAGGTGCCCGTCGACAAGCCAGTGCCCCACTACATCGACAA
ACCAGTGCCCCACTATGTGGACAAACCAGTGCCAGTGCCCGTGATCAAGA
TGTGCCAGTGCCCGTCCATGTGCCCTATGATCGTCCCGTGCCCGTTCATG
TCGAGAAGCCAGTGCCCTATGAGGTCAAGGTCCATGTGCCCGCCCCCTAC
CCGGTGATCAAGGAAGTGCCAGTGAAAGTGGAGAAACACGTTCCGTACCG
GTCAGATCCCCGTGGAGAAGCCCGTCCATGTTCACATCGAGAAGCACGTG
CCGGAATACCATGAAGAAGCATGTCACCTACAAGGAGCCGGAGTTCCACC
ACAAGGCACATCGAAGGAGGATCATCACACGCGCCAATCCATCAACCAAT
TCGCAACCCAATTGGTGGAAAATGGCACGGAGGGTGGGAGACATGAATTG
GCCTCTCAATGAATAATCATCC
FMO07957.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16886-RA | 2433 | CG16886-RA | 193..1287 | 8..1108 | 5040 | 98 | Plus |
| CG16886-RB | 2326 | CG16886-RB | 193..1262 | 8..1079 | 5010 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13921910..13922462 | 1044..493 | 2385 | 98.2 | Minus |
| 2L | 23513712 | 2L | 13922523..13922999 | 496..20 | 2385 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:48:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| McClintock | 6450 | McClintock McCLINTOCK 6450bp | 1971..2013 | 1021..1063 | 116 | 74.4 | Plus |
FMO07957.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:21:10 Download gff for
FMO07957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16886-RA | 184..1259 | 1..1079 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:32 Download gff for
FMO07957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16886-RA | 187..1262 | 1..1079 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:01 Download gff for
FMO07957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16886-RA | 187..1262 | 1..1079 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:01 Download gff for
FMO07957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13921878..13922460 | 495..1079 | 97 | <- | Minus |
| 2L | 13922525..13922998 | 21..494 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:32 Download gff for
FMO07957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13921878..13922460 | 495..1079 | 97 | <- | Minus |
| arm_2L | 13922525..13922998 | 21..494 | 100 | <- | Minus |
