FMO07960.5prime Sequence
824 bp (824 high quality bases) assembled on 2009-09-01
> FMO07960.5prime
CAGTCGACATGGCTCAGCCCAGGTATGACGATGGCCTACACGGCTACGGC
ATGGACTCCGGAGCCGCAGCAGCGGCCATGTACGATCCACACGCCGGTCA
CCGGCCGCCCGGACTGCAGGGCCTCCCCTCGCACCACTCTCCGCACATGA
CGCACGCAGCGGCGGCGGCGGCCACAGTGGGCATGCACGGCTACCATTCG
GGGGCCGGGGGTCATGGAACACCTAGTCATGTATCGCCGGTCGGTAATCA
CCTAATGGGCGCAATACCCGAAGTACACAAACGTGATAAGGATGCGATTT
ATGAACATCCGCTATTCCCGCTTTTGGCGCTGATCTTTGAGAAGTGCGAA
TTGGCCACATGTACGCCAAGGGAGCCCGGTGTGCAAGGTGGCGATGTCTG
TTCGTCGGAATCGTTCAACGAGGATATTGCAATGTTCAGTAAACAGATAA
GATCACAGAAACCCTATTATACCGCAGATCCCGAAGTCGACTCACTGATG
GTGCAAGCAATACAAGTACTTCGGTTTCACCTTTTAGAATTAGAAAAAGT
ACACGAGTTATGCGATAACTTCTGTCATCGGTATATATCGTGTTTAAAGG
GTAAAATGCCAATAGATTTAGTGATCGACGAACGGGACACCACCAAACCA
CCGGAGTTGGGATCGGCGAACGGAGAAGGGCGCAGCAACGCCGACTCCAC
ATCGCACACCGATGGAGCTAGTACACCAGACGTTGTGAGTACCCCCTTCG
CGGGAGCACATGGTCCTATATTGGCGAGCTACAATGCGGTGGTGCACCCA
TGTTCGGCAAGCTTTCTAGACCAT
FMO07960.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:55:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hth-RI | 6340 | CG17117-RI | 1278..2075 | 9..806 | 3975 | 99.9 | Plus |
| hth-RF | 2462 | CG17117-RF | 1278..2075 | 9..806 | 3975 | 99.9 | Plus |
| hth-RE | 3868 | CG17117-RE | 1747..2472 | 9..734 | 3615 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:55:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10605088..10605369 | 304..23 | 1410 | 100 | Minus |
| 3R | 32079331 | 3R | 10585671..10585928 | 806..549 | 1290 | 100 | Minus |
| 3R | 32079331 | 3R | 10602786..10602933 | 452..305 | 710 | 98.6 | Minus |
| 3R | 32079331 | 3R | 10591406..10591460 | 551..497 | 275 | 100 | Minus |
| 3R | 32079331 | 3R | 10593551..10593604 | 497..444 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:55:02 has no hits.
FMO07960.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:21:17 Download gff for
FMO07960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hth-RF | 1248..2050 | 1..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:15 Download gff for
FMO07960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hth-RF | 1273..2075 | 1..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:24 Download gff for
FMO07960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hth-RF | 1273..2075 | 1..806 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:24 Download gff for
FMO07960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10585671..10585928 | 549..806 | 100 | <- | Minus |
| 3R | 10591409..10591459 | 498..548 | 100 | <- | Minus |
| 3R | 10593551..10593601 | 447..497 | 100 | <- | Minus |
| 3R | 10602792..10602933 | 305..446 | 99 | <- | Minus |
| 3R | 10605088..10605368 | 24..304 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:15 Download gff for
FMO07960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6411393..6411650 | 549..806 | 100 | <- | Minus |
| arm_3R | 6417131..6417181 | 498..548 | 100 | <- | Minus |
| arm_3R | 6419273..6419323 | 447..497 | 100 | <- | Minus |
| arm_3R | 6428514..6428655 | 305..446 | 99 | <- | Minus |
| arm_3R | 6430810..6431090 | 24..304 | 100 | <- | Minus |
