FMO07964.5prime Sequence
1130 bp (1022 high quality bases) assembled on 2009-09-01
> FMO07964.5prime
CAGTCGACATGTTACTACACGAGAGTGCCGCCAGCATGGAACAGAGTATG
CCCGAGAACCTCAGCACTCACATGTACGGCGAGTGTGAAGTGAATCCAAC
GCTGGCAAAGTGTCCCGATCCAGTGAATGTCGATCATGAGCTGCCCACCA
AAGAATCCTGTGCCTCGACTACCATAGTCAGTACGTCGCCAACCAGCGCC
ACGAGCACCACCAAAGTCAAGCTGAGCTTCAGTGTGGATCGTCTGTTGGG
CTCGGAACCCGAGGAATCCCACCGGCAGAGCTCCTCCTCGCCCTCGACCA
AGTCATGCTGCGATGGCAGCATTCTAGCCTGCTGCTCCTTCCCCCACTGC
TTCAGCCAGGCGAATGCCGAATCCCGTAGGTTTGGACATGCCACGCTTCC
GCCCACTTTCACACCCACTTCATCGCACACGTACCCCTTCGTGGGTCTGG
ATAAGCTGTTCCCTGGCCCCTATATGGATTACAAATCAGTGCTCAGACCG
ACGCCAATTCGGGCAGCAGAACACGCCGCACCCACTTATCCCACGCTGGC
TACCAATGCGCTCCTCCGCTTCCATCAACATCAGAAGCAGCAGCACCAGC
AGCATCATCATCATCAGCACCATCCCAAACACCTCCATCAGCAGCACAAG
CCCCCGCCACACAACTCGACGACAGCCTCGGCGCTACTGGCGCCGCTCCA
CAGCCTCACGAGCCTCCAGCTGACGCAACAGCAGCAGCGATTTCTGGGCA
AGACGCCGCAGCAGCTCCTGGACATAGCGCCCACCTCGCCCGCCGCCGCC
GCCGCTGCCACATCCCAGAACGGTGCACATGGACATGGAGTGGCAATGGC
CAGGGCAACGCCTCAGCCGGAAGCAATGGGAAGCGCAAGCGATCCTGGTC
TCGCGCCGTCTTCTCGAATCTGCAGCGCAAGGGCCTGGAGATCAGTTCAG
CAGCAGAAGTACATCACAGCCAGATCGCGCAGCTGGCGGCACGACTGATC
CTCACGACGCTCAGGTCAAGGTGTGGTCCGGACCGTCGCATGACTGGCCG
CACCGCGGCGGGATTCTGAGAGTGTGCAGGAAGCAGCGAGTGCAATACCG
GATTCGGGAGGTGTCTTCAGACTCAGGCAA
FMO07964.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| H2.0-RA | 1662 | CG11607-RA | 210..1335 | 9..1119 | 5035 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6018677..6019193 | 525..9 | 2585 | 100 | Minus |
| 2L | 23513712 | 2L | 6013598..6014097 | 1016..525 | 2110 | 97.6 | Minus |
Blast to na_te.dros performed 2014-11-28 22:59:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6914 | 570..765 | 221 | 61.5 | Plus |
FMO07964.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:21:07 Download gff for
FMO07964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| H2.0-RA | 199..1250 | 1..1043 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:34 Download gff for
FMO07964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| H2.0-RA | 203..1254 | 1..1043 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:32:00 Download gff for
FMO07964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| H2.0-RA | 203..1254 | 1..1043 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:32:00 Download gff for
FMO07964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6013600..6014096 | 526..1014 | 97 | <- | Minus |
| 2L | 6018677..6019199 | 1..525 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:34 Download gff for
FMO07964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6013600..6014096 | 526..1014 | 97 | <- | Minus |
| arm_2L | 6018677..6019199 | 1..525 | 99 | | Minus |
