FMO07965.5prime Sequence
1131 bp (1008 high quality bases) assembled on 2009-09-01
> FMO07965.5prime
CAGTCGACATGAACTACAACGCCAAGCGAGTAATGCGACAGAACTCGGTT
TGCGTGGGTTCCAACGACATGGCAGCGTCGCCGATAATGATTGGACCTGC
CCCGCCCTCGGCGCCCAGCACGCCGCAACTGCAGACCACCGAGGACATCA
AGCCACTGCTTGTGCAGCGCCAAGTGATTCTGCTGCAAAGTGGAAGCATA
CCGACGAATCCCTCGCCACAGCAGATCAACCTAGCTGGACATAATGTAGC
CGGTGGTGCCAGCGGGAGCAACGTTGCCAACGTTCTCATTCCGGATGATG
CACCTGTCTCACTGCTCACAGAGATTGCGGATATCATGCGAAGCTTCGGC
GACAGCGATCAGCCCAGGACGGGAAGTGTCAAGCTGGTGGAGCAGATCCT
GCAGCAGCAGCTGCGCGGCATCTTCAATGAGGCTTCGCTGGTGGCCATGC
GGCGGAAACAGAATCCCTGCCCGTCGCAGGCGGACTTTGAGTTCCTGATG
CGCAACCATCCGGTGAAGATAGCTCGGATGCGAAAGCACCTCAAGGATAT
GCGCATACTCAAAAGGTTCCTTAGTATCCGCACGGGAAGGCCGCAGGACT
TCATGGACGACTTGGAGCAGCAGGAGGAGGACGAGGAGCTGGCCATCGAT
GTGTACGAGCTACACGACGAGGACCGAATGCGAAGATTATTCCGCGCAGA
TCGGATATCGCAGATCCTTACGGGCCAGCAATACCTGGAGTTCAATGAGG
CGCGCAAGACGTCATTCTACTGCCGCCATGGGGAGAAGATCAAGAACAAG
TTCCGCCGCTTTCTGGACCTGCCCGCGGACCTTCGCATCCCAACGCCGAC
AATGAACATTTTGGCCTATCTGGCGCATGAGACCATTGCCGCCATTGTCG
ACTATTCGATCCTGACGCGCCTGAACTCGGACACCGTGCGACCGAGCCCT
ACAGCCGAGTGACCTCCGCCGAGCAGTCGGCTATGATGCACGTCTGTCCG
GAGTCACACAGTCGCGGCATGAGTGTCAAGCCAATCATGTACCGAAATCC
ACGAGCATGCCCCGTTTCCCGCAATGACACCGTAGATGGGCGATCGCACT
CTTGCCATCGATTCCGGCCAGTTTCTAGCAT
FMO07965.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:18:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spt3-RA | 1395 | CG3169-RA | 71..1218 | 9..1129 | 5060 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:18:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12017226..12018224 | 9..1003 | 4815 | 99.5 | Plus |
Blast to na_te.dros performed 2014-11-28 22:18:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy8 | 4955 | gypsy8 GYPSY8 4955bp | 4406..4443 | 374..411 | 118 | 78.9 | Plus |
| gypsy4 | 6852 | gypsy4 GYPSY4 6852bp | 6564..6727 | 651..808 | 111 | 58.1 | Plus |
| gypsy4 | 6852 | gypsy4 GYPSY4 6852bp | 55..157 | 709..808 | 110 | 60.2 | Plus |
FMO07965.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:21:06 Download gff for
FMO07965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spt3-RA | 69..1134 | 9..1060 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:40 Download gff for
FMO07965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spt3-RA | 71..1136 | 9..1060 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:54 Download gff for
FMO07965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spt3-RA | 71..1136 | 9..1060 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:54 Download gff for
FMO07965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12017226..12018291 | 9..1060 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:40 Download gff for
FMO07965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7842948..7844013 | 9..1060 | 98 | | Plus |
