FMO07966.5prime Sequence
1128 bp (1024 high quality bases) assembled on 2009-09-01
> FMO07966.5prime
CAGTCGACATGCTTTCCATGCAAGAGCTAATGGATATGCGGATGCAGCAG
CAGCTGGCCCACGAGATCTACCGCCAGCAGATCATGCAGCGGATTCCAGA
TCCCTTTCCATCGATGTTACCTTTCAACATGCCCCACCAGCAGCCGCACA
TGATGCTGCCCAGTCGTCCCACCCTGCCCGGCGTGGAGGCCAAGTTGGAG
AACAACGATTTGTGGCAACAGTTCCATAAAATCGGCACCGAGATGATCAT
CACAAAGAGCGGCCGACGCATGTTCCCCTCGATGCGAGTTTCCCTCAGCG
GACTGGAGGAGGAGGCCAGCTATTGCGTACTCCTCGAGATGGTGCCCATT
GGCGATTGCCGCTACAAGTTCTCCGGTTCCCAGTGGGTTCCGGCCGGAGG
AGCCGAGCCCCAGAGTCCGCAGCGCATGTATCTGCATCCGGACAGTCCGG
CGACCGGTGCCCATTGGCAATCCCAGGCATTGCTCTTCAACAAGGTCAAA
CTGACCAACAATACACTGGACAGCAGCGGACATATCGTTTTGGCCAGCAT
GCATAAGTACCAGCCACGCCTGCACATCATCCGCAGCAGCGAGCTCACCC
AACTTCCATGGGCTCCTCAGCAGGCGTTCGTTTTCCCGGAGACGGAGTTC
GTAGCTGTCACAGCCTATCAGAACGATCGCATCACCAAATTGAAGATCGA
TAACAATCCGTTCGCTAAGGGTTTCCGCGAGTCGGGTCAATCCCGCTGCA
AAAGGAAGCTGACAGCAGCGGAAACTCGACGCTGGAGTCGGAGGATGATG
GCTCCAGTGTGAGCAGCTGCGATTCTCCGCATGCGAAGCGCCAGCGCCAG
GATTTTGAGCAGGACTCAACGGGTAGTGTTTCGCCAGCTTACTATGGAGC
AACTCATCCAGTTGCCAATCCTATGTCGCGTATCTCCGCCATCACTTGAG
CTATGGACCCAGTGAGCTGCCGATTGCCGCCCAGCATTGCAGCTGCCTAT
TTTGGTGGAGTCCTCCGCAGATTCTGCAATGCCACCAGGCAAAAATGCAC
CAACTGTCCGCCTTTTTAGTCCTGTGGCCTCCCACCGTGGTCCAGCATCC
ACAACATCACCAGCTCAACCTCACGAAA
FMO07966.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Doc1-RA | 1526 | CG5133-RA | 161..1281 | 4..1112 | 5145 | 98 | Plus |
| Doc1-RB | 1339 | CG5133-RB | 68..1094 | 98..1112 | 4690 | 97.9 | Plus |
| Doc3-RA | 1671 | CG5093-RA | 279..872 | 168..758 | 1505 | 83.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9044342..9044760 | 669..1081 | 1645 | 96.2 | Plus |
| 3L | 28110227 | 3L | 9043387..9043655 | 265..533 | 1345 | 100 | Plus |
| 3L | 28110227 | 3L | 9005774..9006029 | 265..520 | 860 | 89.1 | Plus |
| 3L | 28110227 | 3L | 9042027..9042198 | 94..265 | 860 | 100 | Plus |
| 3L | 28110227 | 3L | 9014708..9014976 | 533..265 | 700 | 84 | Minus |
| 3L | 28110227 | 3L | 9043724..9043861 | 534..671 | 690 | 100 | Plus |
| 3L | 28110227 | 3L | 9041535..9041630 | 4..99 | 465 | 99 | Plus |
| 3L | 28110227 | 3L | 9013541..9013624 | 752..669 | 270 | 88.1 | Minus |
| 3L | 28110227 | 3L | 9005554..9005634 | 183..263 | 240 | 86.4 | Plus |
| 3L | 28110227 | 3L | 9006159..9006296 | 534..671 | 225 | 77.5 | Plus |
| 3L | 28110227 | 3L | 9018801..9018884 | 99..16 | 225 | 84.5 | Minus |
| 3L | 28110227 | 3L | 9014492..9014622 | 671..541 | 220 | 77.9 | Minus |
| 3L | 28110227 | 3L | 9006361..9006450 | 669..758 | 210 | 82.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:48:29 has no hits.
FMO07966.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:21:06 Download gff for
FMO07966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Doc1-RA | 157..1294 | 1..1123 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:25 Download gff for
FMO07966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Doc1-RA | 159..1296 | 1..1123 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:54 Download gff for
FMO07966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Doc1-RA | 159..1296 | 1..1123 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:54 Download gff for
FMO07966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9041533..9041630 | 1..99 | 96 | -> | Plus |
| 3L | 9042033..9042198 | 100..265 | 100 | -> | Plus |
| 3L | 9043388..9043655 | 266..533 | 100 | -> | Plus |
| 3L | 9043724..9043861 | 534..671 | 100 | -> | Plus |
| 3L | 9044345..9044812 | 672..1123 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:25 Download gff for
FMO07966.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9034633..9034730 | 1..99 | 96 | -> | Plus |
| arm_3L | 9035133..9035298 | 100..265 | 100 | -> | Plus |
| arm_3L | 9036488..9036755 | 266..533 | 100 | -> | Plus |
| arm_3L | 9036824..9036961 | 534..671 | 100 | -> | Plus |
| arm_3L | 9037445..9037912 | 672..1123 | 94 | | Plus |
