FMO07969.5prime Sequence
1136 bp (988 high quality bases) assembled on 2009-09-01
> FMO07969.5prime
CAGTCGACATGTTCGACGAGCCCATATCCAGCTTCGTTTTTACCGACGAA
GAGACCACGCAGACATTCCACCACCAGTGGTTTTCCCAGGGCCAGTTACA
CGAATGTGCCACCTGCTACAGCTCCATCGACGCAGATGAGCCGCCCTCCC
AGCATTGGCTGCGGGGAGGAGAAGCATCACAGGGCTTGCATCTTACCAAG
CAACAGCAGGCCGTTATGGATATTATCGAGGCCCGCCAGATCGAGACTTT
CTTTTTCTGCGACGAGAGTTCCAAGGACAAGCTGGAACACTTCATGGGCG
AGACCTGTGCGAGGGGAATCCCCGAGCTTCTCCGCTGGATGTTCCAGAAC
AACACCGTGGCCGTGGAGTTCAATTTGGCCTGCTACGTGAACGCCATGGA
CCAGGTGTTGATCTTTCAGAGCGGCTCGCTGAGGGTGGACCACCACTACG
ACGTAGACGAATCCGTGGGCGTGGTCTACGAGATGCTTATGCAGAGGATC
GAAAACTACCTCAACTGCAGCAGCGAGTACGGCATGGCAGAGTGCAGCAT
CACCAGATTGAAAGTACAGGTGAAGAGGATTAGGGTGGAGGCGGACGGTC
AGTCAGCGGACTCGTCCGTCTTCGCCCTACCCCTGCAGCTTCAGGAGGAG
GAGGGCCTGACCGCCACTACCGGCTGCTCCACCAGCGAGGCAGAGCTTGC
CAGTCTGCGCTCCGCCTACCTGAAGCACTTCCGCGAGTGCAACGGCAACT
TCCCGCCCAACATGCGCGTCAATCTCTACGGACTGCAGCAGTGCAAGACC
ACCAAGGAGCTGTATGTGGGTGCCCTATCATATCAGCGAAACCCTCCAGC
AGCTGCCCAACAAGAACTTCCTCATCCTGAACAATATCATGGGCCAATTC
CAGCGGCTCCACGAAGCTCTCCACCCCCGTCAATTCCATCGAAAGGGATC
AGACCAGCTCGCCGCTAAAGACCTCCACTGCCGGAGTGTCGCACCCTAGT
CTCGCGACGCATCAAACTGCCATCACAGAAGCTGCGCTTGTGCAGGACTT
CTCGTGAAAGCATGCACGCGGAATTCGGGAAGATCTACGAACATGCCTTG
CCAATCTCAGAAGCGTCTTCCAGCAGCCTGCTACGC
FMO07969.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7271-RA | 1407 | CG7271-RA | 100..1235 | 8..1135 | 5150 | 97.7 | Plus |
| term-RA | 1469 | CG4216-RA | 160..1298 | 8..1135 | 5005 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18588858..18589993 | 8..1135 | 4860 | 97.2 | Plus |
| 3L | 28110227 | 3L | 18592474..18593612 | 1135..8 | 4690 | 96.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:49:56 has no hits.
FMO07969.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:21:03 Download gff for
FMO07969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7271-RA | 90..1231 | 1..1136 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:15:23 Download gff for
FMO07969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7271-RA | 94..1235 | 1..1136 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:18 Download gff for
FMO07969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7271-RA | 94..1235 | 1..1136 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:18 Download gff for
FMO07969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18588852..18589993 | 1..1136 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:15:23 Download gff for
FMO07969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18581952..18583093 | 1..1136 | 97 | | Plus |
