FMO07971.5prime Sequence
677 bp (677 high quality bases) assembled on 2009-09-01
> FMO07971.5prime
CAGTCGACATGGCTTTCAAGCTCGTTGCTCTGGTTTCCTGCTGCCTGGCA
GCCGTGTCCGCTGGACTTATCCCTGTGGAGCAGCACGACCAGCATCCCCA
GCTGTACCAGGCCCACCAGCCCCAGCATGTGATCTACCAAAAGCAGCACG
AGATCCATCCTCACGGCCATGAGGTCTATCCCGATGACCCACATCCCAAG
TACAACTTCGCCTACGATGTGCAGGATGCGCTCTCCGGAGACTCGAAGAG
CCAGGTGGAGTCTAGGGATGGGGATGTGGTGCAGGGAGAGTACTCTCTGG
ATGATGCTGATGGCTTCCGTCGTACTGTAAAATACACCGCCGATTCCGTC
AATGGATTTAATGCCGTTGTGCACCGCGAGCCCCTGGCCCATGTGCACCA
CAAGGTGGTGGCTGCAGCTCCTGTTCAGTACCACCACGCTCCTGCCGCCG
CCGCTGCCGTCATCAAGAGCTACGCCTCCCCTTCCCAGGCTTATGTCGCT
CCCACCTACGCAGCCCCTGCCTACACCGCCCCCGCCTACGCCACCCACCA
GGCTGAGCAGCCGCAGGAGCGGGAGCACCAGCAGCACCACTATGCCAGCT
ACGAGTCCCCTGCCCACGCCCAGGCCGCCCACGAAGGACATGAGTACTAC
CACCACCAGGCAAGCTTTCTAGACCAT
FMO07971.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ccp84Ac-RA | 1060 | CG1327-RA | 90..740 | 9..659 | 3255 | 100 | Plus |
| Ccp84Ad-RA | 735 | CG2341-RA | 241..436 | 192..387 | 350 | 79.2 | Plus |
| Cpr5C-RA | 605 | CG4052-RA | 235..430 | 192..387 | 320 | 77.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6695468..6696112 | 659..15 | 3210 | 99.8 | Minus |
| 3R | 32079331 | 3R | 6693033..6693228 | 192..387 | 350 | 78.6 | Plus |
| X | 23542271 | X | 5804974..5805169 | 192..387 | 320 | 77.6 | Plus |
| 3R | 32079331 | 3R | 6687103..6687298 | 192..387 | 290 | 76.5 | Plus |
| 3R | 32079331 | 3R | 6689759..6689954 | 387..192 | 275 | 76 | Minus |
| 3L | 28110227 | 3L | 4215958..4216132 | 199..373 | 245 | 76 | Plus |
| 3R | 32079331 | 3R | 6702374..6702494 | 387..267 | 185 | 76.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:26:24 has no hits.
FMO07971.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:21:09 Download gff for
FMO07971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccp84Ac-RA | 84..743 | 1..663 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:02 Download gff for
FMO07971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccp84Ac-RA | 84..744 | 1..664 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:01 Download gff for
FMO07971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccp84Ac-RA | 84..744 | 1..664 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:01 Download gff for
FMO07971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6695462..6696112 | 15..664 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:02 Download gff for
FMO07971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2521184..2521834 | 15..664 | 99 | | Minus |
