FMO07973.5prime Sequence
506 bp (506 high quality bases) assembled on 2009-09-01
> FMO07973.5prime
CAGTCGACATGGGCAAAGTGAAAGTAGAGCGCTCCGAGGATGCCGATGAG
TCCGTTGTGGCCAGCGGCGATGTTACCATCAAGGAGGAGGAGTCCTACGA
CGACAAGCTGATCTTTGTGAACGCCATCGCGAAACCGATGGCAGGTAAAA
AACTGGCCAAAAAGTGCTACAAACTGGTGAAGAAGGCCATGAAGCACAAG
ACTTTCCTGCGAAATGGACTTAAGGATGTACAGACTCGCCTGCGCAAGGG
CGAAACTGGCATTTGCATCTTTGCTGGCGACGTTACACCTGTGGACATCA
TGTGCCACTTACCAGCCGTCTGCGAGGAGAAGGGCATCCCCTATACCTAC
ACCCCCAGTCGAGCGGATCTTGGAGCTGCCATGGGCGTGAAGCGCGGTAC
AGTCGCCCTGCTGGTCCGCCAGAACGAGGAGTACAAGGATCTGTACGACG
AGGTCAAGGAGGAGCTGTCTGCACTAAACATACCCGTCGCAAGCTTTCTA
GACCAT
FMO07973.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NHP2-RB | 781 | CG5258-RB | 79..558 | 9..488 | 2400 | 100 | Plus |
| NHP2-RA | 667 | CG5258-RA | 79..558 | 9..488 | 2400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14801840..14802090 | 259..9 | 1255 | 100 | Minus |
| 3L | 28110227 | 3L | 14801551..14801780 | 488..259 | 1150 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:36:57 has no hits.
FMO07973.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:21:01 Download gff for
FMO07973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NHP2-RA | 95..579 | 1..488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:20 Download gff for
FMO07973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NHP2-RA | 74..558 | 1..488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:23:07 Download gff for
FMO07973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NHP2-RA | 74..558 | 1..488 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:23:07 Download gff for
FMO07973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14801840..14802094 | 1..259 | 98 | | Minus |
| 3L | 14801551..14801779 | 260..488 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:20 Download gff for
FMO07973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14794651..14794879 | 260..488 | 100 | <- | Minus |
| arm_3L | 14794940..14795194 | 1..259 | 98 | | Minus |
