FMO07976.5prime Sequence
1122 bp (975 high quality bases) assembled on 2009-09-01
> FMO07976.5prime
CAGTCGACATGCCCGAGGTCCTCAGCGGCACGCCCACCAACAGCCACAAC
AAAGCCAACATCGCCATGATGAACAACGTCCGGCTATCCAATATATCGCC
GACTCTCTCGATGAACGGCAGCTCCAACGAGGCTTCTAACTTGCATCCGT
TGTCCATGTACGGAGGATCCATAAGTCCGCAGTCAAATGACAGCGGCATG
TCCGACAGTCTGGGCAAATATGTCCCGGGAAGCGGCTATGGAGATGGAAT
GATGGCCCAGTCGCCCTCACAGGGTGGCAATGGACCGCAGTCGGCGTTGA
CCGCCGCCCAGAAAGAGCTCTTCTCGCAGCGAAAGCAACGCGAATTCACC
CCGGACAACAAGAAGGACGAGAGCTACTGGGATCGCCGGAGAAGGAACAA
CGAGGCGGCCAAGCGGAGTCGAGAGAAGAGGCGCTACAATGACATGGTTC
TGGAGCAGCGCGTCATCGAGCTGACCAAAGAGAACCATGTGCTGAAGGCC
CAGCTGGACGCCATACGCGACAAGTTCAACATCTCCGGCGAGAATCTGGT
GAGCGTGGAGAAGATCCTCGCCTCGCTGCCCACCAGCGAACAGGTGCTGA
GTAACACAAAGCGCGCCAAGATGAGCGGCAGTGGTGGCTCCTCCTCGGGC
TCCTCGCCCTCGGACAGTGGATCGGGCGAGGGATCGCCTCAAGGTGGCCA
CAATGGCTATCCGGTGGGTCCACCACTATCTCCACTGATCTACGGACCCA
ATGGCAATGCCCGGCCAGAGGCCACGGTTAAGAGTGTCCACCACATACAT
CATGCGGGTGTTGCGCCGCCACCAACGCACCTACAACAGTTGGTTGTGCC
CCAGTCCCAGACACAGCATCTCTACCAGGCAAAGCCGCAGCAGCATCAGC
CGCATCAGCAGCAGCAGATTTCCCAGCCACCGCAGCAACAACAGCAGCAG
CAGGAGCCAAGTCCCGTGCCGGCTCAGTTCGGCAGTCATCTCGATCCGCA
CAATCGCCCGCTAGCACCACCATTGCAATCTCCATGGTGCAACTGCAGCA
GCACTAACCGCAATGTCAAGACCGAAGGATCGAAAGCTAGCCCAGGTGGT
GGTCGCCTGGCCCTATCATGCG
FMO07976.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vri-RF | 4068 | CG14029-RF | 733..1839 | 9..1107 | 5075 | 97.8 | Plus |
| vri-RE | 3890 | CG14029-RE | 782..1888 | 9..1107 | 5075 | 97.8 | Plus |
| vri-RD | 3455 | CG14029-RD | 733..1839 | 9..1107 | 5075 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5308021..5308934 | 142..1051 | 4185 | 98.7 | Plus |
| 2L | 23513712 | 2L | 5307780..5307912 | 9..141 | 665 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:18:24 has no hits.
FMO07976.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:20:58 Download gff for
FMO07976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vri-RD | 656..1738 | 1..1081 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:33 Download gff for
FMO07976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vri-RA | 670..1752 | 1..1081 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:56:43 Download gff for
FMO07976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vri-RD | 728..1810 | 1..1081 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:56:43 Download gff for
FMO07976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5307775..5307912 | 1..141 | 97 | -> | Plus |
| 2L | 5308021..5308965 | 142..1081 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:33 Download gff for
FMO07976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5307775..5307912 | 1..141 | 97 | -> | Plus |
| arm_2L | 5308021..5308965 | 142..1081 | 98 | | Plus |
