FMO07977.5prime Sequence
509 bp (509 high quality bases) assembled on 2009-09-01
> FMO07977.5prime
CAGTCGACATGAGTATGAGCGACGACGACCGCGACATAGACATCGAAAGT
GACGAGGACGGGGACTCGGACACTGGCTTGGGATCCTCGCGACACACAAA
CACCGCCAATTTCACCCAGGCCGAAAAGCGGGCGCACCACAACGCTTTGG
AGCGAAGGCGGCGCGATCACATCAAGGAGAGCTTCACCAACCTGCGTGAG
GCGGTGCCCACACTCAAGGGCGAAAAGGCGAGTCGAGCTCAAATCCTGAA
AAAGACCACCGAATGCATACAGACGATGAGGCGGAAGATCAGTGAAAACC
AGAAAGACATCGAAGAGATCAAGAGGCAAAACAACATAATAGCTAAGCAG
ATACAAGCACTGGAGAGTTCAAATGGGGATCAGTTCAGCGAATTTCTCAG
CGACGAGGAAGTGGGCAGCGAGGAGGCCGACGACGAAGACCTCGACCAGG
ACTTCAGTAGACGCAATAAAAAGATGAAGACCTTCCACGCAGCAAGCTTT
CTAGACCAT
FMO07977.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Max-RD | 1289 | CG9648-RD | 158..642 | 7..491 | 2425 | 100 | Plus |
| Max-RC | 822 | CG9648-RC | 158..642 | 7..491 | 2425 | 100 | Plus |
| Max-RA | 995 | CG9648-RA | 158..642 | 7..491 | 2425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19262879..19263018 | 491..352 | 700 | 100 | Minus |
| 3L | 28110227 | 3L | 19263084..19263209 | 351..226 | 630 | 100 | Minus |
| 3L | 28110227 | 3L | 19263416..19263526 | 228..118 | 555 | 100 | Minus |
| 3L | 28110227 | 3L | 19263839..19263905 | 120..54 | 335 | 100 | Minus |
| 3L | 28110227 | 3L | 19263980..19264027 | 54..7 | 240 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 23:04:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy4 | 6852 | gypsy4 GYPSY4 6852bp | 508..608 | 263..360 | 119 | 60.4 | Plus |
FMO07977.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:20:57 Download gff for
FMO07977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Max-RA | 160..653 | 1..497 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:35 Download gff for
FMO07977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Max-RA | 153..646 | 1..497 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:34:36 Download gff for
FMO07977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Max-RA | 153..646 | 1..497 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:34:36 Download gff for
FMO07977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19262875..19263018 | 352..497 | 97 | <- | Minus |
| 3L | 19263084..19263207 | 228..351 | 100 | <- | Minus |
| 3L | 19263417..19263524 | 120..227 | 100 | <- | Minus |
| 3L | 19263840..19263905 | 54..119 | 100 | <- | Minus |
| 3L | 19263981..19264031 | 1..53 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:35 Download gff for
FMO07977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19255975..19256118 | 352..497 | 97 | <- | Minus |
| arm_3L | 19256184..19256307 | 228..351 | 100 | <- | Minus |
| arm_3L | 19256517..19256624 | 120..227 | 100 | <- | Minus |
| arm_3L | 19256940..19257005 | 54..119 | 100 | <- | Minus |
| arm_3L | 19257081..19257131 | 1..53 | 94 | | Minus |
