FMO07978.5prime Sequence
1017 bp (888 high quality bases) assembled on 2009-09-01
> FMO07978.5prime
CAGTCGACATGGATGCCACACAGCTAACGGAACTAATGGGCAGCCATGAT
TTTATGCAATTACAACATCAATTGCATCACAATAACAACAATTACAACAC
AGACGGACACAATGGACTGTCTTCAGAATCAGCGGAGGGAAGTTCTCGAC
CCGTCCGTCGTGCCACCAGACGAACTTCACAGCTAAGCAATAATACTTAT
GACCTGGAGATGACAGATTCCAGTTCGCAAAGCGATGACACAAGCGGCGG
AGGCGGCAGCAGCAACGGGGGTGGTAGCACCACAAACACTGGACATCCGT
CCGGCTGCTCTCTGGGCGGTCAGGGGCCATCAGGCCGCGGACGGGTCCAG
CAAGCTAGCTCAGGAGCCTGTCCATCTACCATTGCCCCGAACAGTACCAG
CTCCAACTCCTCCAATGCAAACGGCAACGCCAGTAGGCGGCGGAAAGGCG
CCCTGTACGCTAAGGAGCGGAATATGCGTCGCTTGGAGTCAAATGAACGA
GAGCGAATGCGGATGCACAGCCTAAACGATGCATTTCAATCGCTTCGAGA
GGTCATACCGCACGTGAAGATGGAGCGACGGCTGTCCAAGATTGAAACAC
TCACACTGGCCAAAAACTATATCATAAATCTGACGCACATAATACTCTCC
AAGCGCAACGAGGAGGCGGCGGCCTTGGAGCTGAACTCGGGGGCCGTTGG
TGGGGTGCTGCTCTCAAATCTTTCCTCCGAAAGTGGAGACCGGTAGCGAG
TGGTATTCCTGCAAATTCCAATGCCGCGACGATATGCTTTGAGGATACCC
TGGCCAGCGGAGGTGCCTTTGACTGCGCCATTTTGGCAGCCATCGACGCA
GCCTACTGAACGCTGCACATGACAACAGCCCCGCGATGCAGAGCATCTAT
CACAAGCATACACTTGCAGACTCCGATGGAGCAGCAGCACGTCAGCTAGC
ATCTTCGCACCATCAGCAGCATGCATCCATGCATCTAGGACAGCATCAAT
CCCACAGCAGCTAGCTT
FMO07978.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dimm-RB | 3292 | CG8667-RB | 311..1335 | 8..1011 | 4480 | 97 | Plus |
| dimm-RA | 1411 | CG8667-RA | 43..1067 | 8..1011 | 4480 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21339346..21340112 | 180..939 | 3410 | 98.4 | Plus |
| 2L | 23513712 | 2L | 21339110..21339284 | 8..182 | 875 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:03:25 has no hits.
FMO07978.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:20:57 Download gff for
FMO07978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dimm-RA | 1..988 | 9..981 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:14:22 Download gff for
FMO07978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dimm-RA | 36..1031 | 1..981 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:48:29 Download gff for
FMO07978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dimm-RA | 36..1031 | 1..981 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:48:29 Download gff for
FMO07978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21339103..21339284 | 1..182 | 97 | -> | Plus |
| 2L | 21339349..21340162 | 183..981 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:14:22 Download gff for
FMO07978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21339103..21339284 | 1..182 | 97 | -> | Plus |
| arm_2L | 21339349..21340162 | 183..981 | 97 | | Plus |
