FMO07986.5prime Sequence
966 bp (966 high quality bases) assembled on 2009-09-01
> FMO07986.5prime
CAGTCGACATGTGGTTGCGAGACTTGCGCATTCGTCTAAGTTTTTTCCAC
CTGATGGTGTGTCTGCCCAGTATTTACACAAATGTGCCAAGCTATTCGGA
TCGGTACAACAGAAGGCCTGTGTCCCAGGATCCAGGAATGGGAACCTATG
GCCGCGGGTACATGGAAAACCGGCAGTTGTCCTATAATCGACCTGGACCA
GCCAACTTCCAAGATCCCAGAAATGTGGAGTTGCAGCCGAAACGACGAGA
GTATCTCATTCGATCACATGAAACGCAATCCGATAGGGGGCAACACAAAT
GCCGCATTTGGGTGCCCCCCGATACGGTGGAAAAGTACTCGTACCCCAGT
GTCATCCAGACGGACCAGGCCAACCGGCTGTCCCTGATCGAGGTCTGCTG
CACCGGATACTCGGCCAGTCGTCTGATGGGCGTAACCGTGTGCCGGGCGC
AATGTGGCTGCCAGAACGGAAGCTGTAAGATTCCTGGTGAGTGCGAGTGC
TATGATGGCTTTGTGCGTAACGACAACGGTGACTGTGTGTTTGCCTGCCC
GCTGGGCTGCCAAAATGGTCAGTGCTATCTGGACGGCAGCTGTCAGTGTG
ATCCGGGCTACAAGCTGGACGAGACGCGACGCTTCTGCCGCCCGATCTGC
AGCAGTGGCTGTGGCAGCAGTCCGCGGCACAACTGCACCGAACCGGAGAT
CTGTGGCTGCTCCAAGGGCTATCAGCTGACCGACGACGGATGCCAGCCCG
TCTGCGAACCGGACTGTGGAATCGGCGGACTCTGCAAGGACAACAACCAG
TGCGACTGCGCTCCTGGTTACAATCTGAGGGATGGTGTCTGCCAGGCCGA
TTGCTATCAGAAGTGCAACAATGGCGTGTGTGTCAGCCGAAACCGATGTC
TATGCGATCCGGGATTTACCTACCATGAGCATCACCATGTGCGTTCAGTA
GCAGCTTTCTAGACCA
FMO07986.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NimB5-RC | 1395 | CG16873-RC | 112..1051 | 9..946 | 4635 | 99.7 | Plus |
| NimB5-RB | 1335 | CG16873-RB | 52..991 | 9..946 | 4635 | 99.7 | Plus |
| NimB5-RA | 1141 | CG16873-RA | 52..991 | 9..946 | 4635 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13971139..13971682 | 317..860 | 2720 | 100 | Plus |
| 2L | 23513712 | 2L | 13970559..13970866 | 9..316 | 1540 | 100 | Plus |
| 2L | 23513712 | 2L | 13971741..13971812 | 860..931 | 345 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:48:08 has no hits.
FMO07986.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:20:51 Download gff for
FMO07986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nimB5-RA | 25..983 | 1..958 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:11 Download gff for
FMO07986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NimB5-RA | 46..1004 | 1..958 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:43 Download gff for
FMO07986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NimB5-RA | 46..1004 | 1..958 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:43 Download gff for
FMO07986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13970553..13970866 | 1..316 | 98 | -> | Plus |
| 2L | 13971139..13971681 | 317..859 | 100 | -> | Plus |
| 2L | 13971741..13971842 | 860..958 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:11 Download gff for
FMO07986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13971741..13971842 | 860..958 | 92 | | Plus |
| arm_2L | 13970553..13970866 | 1..316 | 98 | -> | Plus |
| arm_2L | 13971139..13971681 | 317..859 | 100 | -> | Plus |
