FMO08004.5prime Sequence
191 bp (191 high quality bases) assembled on 2009-09-01
> FMO08004.5prime
CAGTCGACATGTGTCTTACTAACTTAATGTCTCGACGAGCAACACCGAAG
AAAATATTCTCAGATAATGGCACAAATTTCAACGGAGAAGGTGGGGAAGG
AAGAACTAAAAAGGTGGACTTTGGAAAACTTCTTGTTAAATATGACCAGA
TTAAGTTGCCCAAGAGAGAGTTGGCAAGCTTTCTAGACCAT
FMO08004.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 23:18:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 4621551..4621715 | 173..9 | 825 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 23:18:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rooA | 7621 | rooA ROOA_LTR 7621bp | 5135..5188 | 34..87 | 134 | 76.4 | Plus |
| Tc1-2 | 1644 | Tc1-2 TC1-2 1644bp | 1197..1217 | 150..130 | 96 | 95.2 | Minus |
FMO08004.5prime Sim4 Records
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:56:37 Download gff for
FMO08004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 4621548..4621717 | 5..177 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:56:37 Download gff for
FMO08004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 4621548..4621717 | 5..177 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:21 Download gff for
FMO08004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 509053..509222 | 5..177 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:21 Download gff for
FMO08004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 509053..509222 | 5..177 | 97 | | Minus |
