FMO08005.5prime Sequence
1109 bp (946 high quality bases) assembled on 2009-09-01
> FMO08005.5prime
CAGTCGACATGAGGTCATCATCGTGCCAGCTGGTGACTCTGGGCGTTCTG
CTGGCCATCTGTTCCCTGGGTCAGGGACAATTCAAGACGGCTGGCATCAA
GACACGGCAGCCGCCATCGGGAAACCTGCAGCTTGCCGGCAATAGCAGTG
AGTCGGGATGGAGGAGCTACAACCAGAGCAGCTACGGTTGGAGCACTCAA
AACCAGAGCAACTACGCCTGGAACCAGCAGAACCATGTGGAACAGGGATC
CGCTGGATTTGTGCGCGCCGAGGTCTTTCAACCGGTCACATTGCCGCCCC
TTTATGGACACTACGTGCAGCCGGTGACTCCGCCCGCTCATCGTGTCCAG
GTCCTGGATGAAACGGCCCTGTTCATCAACAAAACCAGATCTGCCATGGC
CAGTGGTGTGTGCTACAAGGAAGTTCCAACCGCGTCACTGCTCCGCAATT
CGCGGGATCAGTTCGTTGGCAATGGCACCACTCCGGACATGAGTCGCATC
CAAGTCTGCTGCGATGGCTATGAGCGAAATCCGCACATCTACCGCCGCTG
TGAGCCGATCTGCGCGGATGACTGCCGGAATGGAATATGCACTGCTCCGA
ATACCTGTGTCTGCATACCCGGCCACGTTCGCACCGCCGAGGGCAAGTGC
ATCTCCACCTGTCCCCTGGGCTGCGGCAACGGAGTGTGCGACGAGCGGAA
TGAGTGCAAGTGCCGCGAGGGATACTCGCTTGAGCCGGAGACTCGTAAGT
ACTGCCAGCCGGATGCAAGCCCGGCTGCTCCTTTGGACGCTGTGTGGCGC
CCAACAGTGCGCCTGCCTCGACGGATACCGCCTGGCCGCCGATGGATCCT
GCGAACAGTGTGCGACAGTTGCGAAGAATGGCAAGTGCACGGCTCCAGGA
CACTGCAACTTGCAACCGCAGGCTACCTAAAGGCTCCAGGACGCCTGTCG
AACCCATTTGCTTCATACCCTGCAGACCGGACGCTGGCATTGGACCGGAC
ATCTGTGATGCGCTTCCGGTTTCAAGTGGAACCGGAAGTCGGCCGAATGT
CTGCCGAATGTGTACTCCTGGCTTGACCGGCGTTTGTGTTGGCACAACCA
ATGCGACTG
FMO08005.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NimB2-RA | 1435 | CG31839-RA | 94..1197 | 8..1109 | 4960 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13965507..13966011 | 932..428 | 2240 | 98.8 | Minus |
| 2L | 23513712 | 2L | 13966506..13966925 | 427..8 | 2100 | 100 | Minus |
| 2L | 23513712 | 2L | 13965304..13965376 | 1058..987 | 270 | 94.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:42:11 has no hits.
FMO08005.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:18:55 Download gff for
FMO08005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nimB2-RA | 92..1151 | 1..1063 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:38 Download gff for
FMO08005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NimB2-RA | 88..1147 | 1..1063 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:10 Download gff for
FMO08005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NimB2-RA | 88..1147 | 1..1063 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:10 Download gff for
FMO08005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13965300..13965396 | 967..1063 | 91 | <- | Minus |
| 2L | 13965475..13966011 | 428..966 | 97 | <- | Minus |
| 2L | 13966506..13966931 | 1..427 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:38 Download gff for
FMO08005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13965300..13965396 | 967..1063 | 91 | <- | Minus |
| arm_2L | 13965475..13966011 | 428..966 | 97 | <- | Minus |
| arm_2L | 13966506..13966931 | 1..427 | 99 | | Minus |
