FMO08006.5prime Sequence
1142 bp (1026 high quality bases) assembled on 2009-09-01
> FMO08006.5prime
CAGTCGACATGGAGTGGTCGCTCATCATATCGATTCTGCTCAACTGCCTC
TACGCCAGCGCCTCCGCGCTCGACGAGGATTGCCCCACCTTGGACGATGG
GGACAGTTTGTCGCAAACACAGCTGCTGGATCGCTTAACCCATGGCTGCC
GCTACGATCGTTTGGAACGACCCATAACTTATTCGGAAACTGGCCAGCGG
CTACCGGTGGACGTCTATATGCGCGCCTACATCTACTTCATGCAGAACCT
GGAAGCACACGATCTACAGTTCAAGATCTATGCGCTCCTCCAAATGCGAT
ACCTCGATCCGCGTCTCAACTTTCGCAACGTAAGTCCCAAGCGCAGGCAG
CCGATTTTGGGCGAGGAGCACCTGAGAAACTCGCTCTGGATGCCCCACAT
ATTTCTAGCCAATGAGCGCGACTCCAGTATTTTGGGTCTCACGGAGAAGG
ACATCCTCACCTCGATATCGCCCGATGGCACAGTGATCGTTTCGAATCGC
ATCAAGGCGACACTCTATTGCTGGCTCAACCTTAAGAAGTTCCCATTCGA
TGAGCAGCACTGCTCGACGGTGCTGGAGAGTTGGATGTACAATACGTCGG
AACTGGTCCTCCACTGGGAGCAGAAGCGTCCGATAACCTACGATGGGGCA
CTGCATCTCACCGAGTTTGTGCTGCAGCGTTCCTGGTCAAACGAGACGGT
AATCAATGCCGATTTGAGTGACCTGCGTCATGGAGCCTTTGCCGGCAACT
ACAGCTCCCTCAGCTTCACCGTTCACCTGACGCGAGTGGTTGGCTTTTAC
CTGATGGACTACTTTCTACCCTCCATGCTGATTGTGGCCATATCCTGGTA
TCGTTCTGGCTGCAAGCAGATCAGGCGCCGCCGCGCATCACGCTGGGCAC
CAGCACCCTTGCTGACATTCATTACCCTGGCCTCGGCAAAGGAAAGACTT
CTGCCAAAGGTTAGCTACATCAAGGTGTCAGAAGGTTGTGTTCCTGGGCT
GCACCATCTTCATAATTTGGCAGCATGGTGAGTTCGCTTTGTTACACGAT
TTGGCGTCGTAAAGAAGAAGTGTGCCCGTCAGAAACTGAACAGCAAACAA
ATCCTGGAGTCACTTCTATCGCCGAAATCTGCTCAAACGAGC
FMO08006.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6927-RA | 1868 | CG6927-RA | 80..1210 | 9..1140 | 5230 | 98.2 | Plus |
| CG7589-RB | 2249 | CG7589-RB | 1313..1647 | 723..1056 | 320 | 75.4 | Plus |
| CG7589-RA | 1950 | CG7589-RA | 1014..1348 | 723..1056 | 320 | 75.4 | Plus |
| CG7589-RB | 2249 | CG7589-RB | 948..1182 | 358..592 | 290 | 75.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4907459..4908163 | 435..1140 | 2795 | 96.5 | Plus |
| X | 23542271 | X | 4906979..4907407 | 9..437 | 2145 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:57:54 has no hits.
FMO08006.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:18:54 Download gff for
FMO08006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6927-RA | 68..1199 | 9..1142 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:34 Download gff for
FMO08006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6927-RA | 80..1211 | 9..1142 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:11 Download gff for
FMO08006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6927-RA | 80..1211 | 9..1142 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:11 Download gff for
FMO08006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4906979..4907405 | 9..435 | 100 | -> | Plus |
| X | 4907460..4908164 | 436..1142 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:34 Download gff for
FMO08006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4801012..4801438 | 9..435 | 100 | -> | Plus |
| arm_X | 4801493..4802197 | 436..1142 | 96 | | Plus |
