FMO08009.5prime Sequence
638 bp (638 high quality bases) assembled on 2009-09-01
> FMO08009.5prime
CAGTCGACATGAGCATCGTTGGCGAAAACCATCCCCTCCCAACCCCAACC
CCCGCCAGCGCCGTAGTCACCGCATCATCGGGCGGCGGTGGGGGCGGCGC
GGTCGTCATGGGCGTCGGCGTAGGCGTGACCACAGCGAATGGACCCCGTG
TCGTCACCATTTACAAAACGGAAACGGGCTTCGGCTTCAATGTGCGCGGC
CAAGTTTCCGAGGGGGGTCAACTGCGCTCGATCAACGGCGAGCTGTACGC
CCCCCTTCAGCACGTGAGCGCCGTCCTTGAGAATGGGGCGGCCGAGAAGG
CGGGCATCAAGAAGGGCGATCGCATCCTGGAAGTAAATGGCGTCAGCGTC
GAGGGAGCCACACATAAACAGGTCGTAGATCTGATCAAATCCGGCGGTGA
CTGCCTAACTCTGACGGTGATATCAGTGACACAGCAGGAGGCCGATCGAC
TGGAGCCGCAGGAGGATCAGAGCGGTTACTCCTACATCGATTATTCGGGA
CAAAGCGCTCGCTGCCCATTAGCATACCCGGACTATGGGATCGTGAAATC
GAAATGGCGAGCGGTACATCGTCTTAATATACACATGGCTGGAAGGCAGC
TCTGTTCGCGTCGCTATCGAGAGTTTTGCTAACCTGCA
FMO08009.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32758-RA | 2904 | CG32758-RA | 608..1233 | 9..638 | 3005 | 99 | Plus |
| CG32758-RC | 3273 | CG32758-RC | 112..411 | 335..638 | 1375 | 98 | Plus |
| CG32758-RD | 3596 | CG32758-RD | 73..372 | 335..638 | 1375 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5737099..5737424 | 334..9 | 1630 | 100 | Minus |
| X | 23542271 | X | 5723259..5723362 | 438..335 | 520 | 100 | Minus |
| X | 23542271 | X | 5722930..5723039 | 638..528 | 410 | 97.3 | Minus |
| X | 23542271 | X | 5723114..5723198 | 522..436 | 340 | 95.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:57:27 has no hits.
FMO08009.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:18:52 Download gff for
FMO08009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32758-RA | 608..1240 | 1..637 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:25 Download gff for
FMO08009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32758-RA | 600..1232 | 1..637 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:30:58 Download gff for
FMO08009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32758-RA | 600..1232 | 1..637 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:30:58 Download gff for
FMO08009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5722931..5723043 | 523..637 | 96 | <- | Minus |
| X | 5723114..5723196 | 438..522 | 97 | <- | Minus |
| X | 5723260..5723362 | 335..437 | 100 | <- | Minus |
| X | 5737099..5737428 | 1..334 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:25 Download gff for
FMO08009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5616964..5617076 | 523..637 | 96 | <- | Minus |
| arm_X | 5617147..5617229 | 438..522 | 97 | <- | Minus |
| arm_X | 5617293..5617395 | 335..437 | 100 | <- | Minus |
| arm_X | 5631132..5631461 | 1..334 | 98 | | Minus |
