FMO08011.5prime Sequence
365 bp (365 high quality bases) assembled on 2009-09-01
> FMO08011.5prime
CAGTCGACATGCACAACCGTTGCGGATCCATTTGGCTGCTGGCGGCCGTC
CTGCTGCTGCTGGCGCTCCTGCTTCCGCAGGCACTGCTGCCTACCGTCGA
TGCGGCCAGCGAACCCGTGTGCTCCTACCGCAACTCGGAGGATGAGACCA
TCTTTCTCAAGTATCTGCCGCTGCTGAGACGCGGACAGGACTACGTGGAC
TTCGGCAAGGATGGCAAGTGCCTCAAGCGGGCCATCTGCACGGACACCTT
CAAGACCATCGTGGAGGACTGTGGACAGCAGAAGGTCACCTGCGGCAACA
AGGATCGCTTCACCGGAGTTTTCCCTGCCTGCTGCCTCAAGTGTCCCGCA
AGCTTTCTAGACCAT
FMO08011.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:18:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15201-RA | 489 | CG15201-RA | 34..372 | 9..347 | 1695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:18:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11144319..11144482 | 105..268 | 820 | 100 | Plus |
| X | 23542271 | X | 11144153..11144249 | 9..105 | 485 | 100 | Plus |
| X | 23542271 | X | 11144614..11144692 | 269..347 | 395 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:18:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1530..1602 | 89..20 | 114 | 65.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2394 | 89..19 | 109 | 63.4 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1064..1129 | 80..17 | 109 | 65.2 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1057..1168 | 140..30 | 107 | 57.5 | Minus |
FMO08011.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:20:45 Download gff for
FMO08011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15201-RA | 34..375 | 9..351 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:34 Download gff for
FMO08011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15201-RA | 34..375 | 9..351 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:47 Download gff for
FMO08011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15201-RA | 34..375 | 9..351 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:47 Download gff for
FMO08011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11144153..11144249 | 9..105 | 100 | -> | Plus |
| X | 11144320..11144482 | 106..268 | 100 | -> | Plus |
| X | 11144614..11144695 | 269..351 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:34 Download gff for
FMO08011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11038186..11038282 | 9..105 | 100 | -> | Plus |
| arm_X | 11038353..11038515 | 106..268 | 100 | -> | Plus |
| arm_X | 11038647..11038728 | 269..351 | 97 | | Plus |
