FMO08012.5prime Sequence
882 bp (-87 high quality bases) assembled on 2009-09-01
> FMO08012.5prime
CAGTCGACATGCATCGCACGCAGGAACAAGGGACAAAGTGATGATGTCCT
CGATGACATCGTCGGCGGTGGTCATGCGTTCCACAGCCTCCAGCGCACGT
CTACTGATGCCAAGAAATCAGACGCCCGTGGGCAGATCCGGCAGCGGAAC
ACGCCACTCCACGGGCATGTATTTTACGGAGGTGGATGTGACCGCCAAGA
ATGCCGGCGATTTCAACTACAACATTCGCAGCCAGGATGACATCAGCTCT
GGCTACTCGAGCGCCGAACCTGTGAGTGGTCTCAGTCGCACCTCCTCCAT
GACAAACGCTTCCAAGGCTCGAGCCAAGTCCAAACGCAATGAGTTGCTGG
AAGAGATGAGAGACGAGGTCTACTTAGACACCAGCTGTATTTTCAAGGTG
TGCAAAGGAAGAGCTCAATTCCAGAAGCTGAAAAACTGACAATAGTGGAG
AGTTCTGAAAGCATCCAATCTCAGGAGTTGGAAAAGGTGCTGAAGGAGGA
GAACATTGATGCAGAAAATGAGGCCTTTTTTGAAACTCTTGCCTTTGATA
GAGGAGCACATAAATGAAAGTGGTGGCTAACTATGGAAAGGGATGAAAAG
TTTGTTGCCCCCAGAGCGGAAGCATAATTCGACAGAAGAGGAGCAGTTTG
AAGATGCATTGTTTTGAGGAACCACAGAAATGTGTCTCAAATGAAGTGGA
TGCTAAAAATATTTGAGGAGATACTAACGGATAAGAAGTCAAAACCAGAC
TCCCGAATGGATCTGCTGAAACTACTGATTCAGGAACACCTTTCCCAAAA
CAAGCCCTATGTCCCTCCACCGATAGACCCATTTTTGCTGGTTCAATCGC
TTCTGCATCTGCTCCGAATCCTTTTATGCCCA
FMO08012.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42678-RQ | 2641 | CG42678-RQ | 998..1864 | 9..881 | 3775 | 96.4 | Plus |
| CG42678-RP | 2601 | CG42678-RP | 958..1824 | 9..881 | 3775 | 96.4 | Plus |
| CG42678-RK | 1931 | CG42678-RK | 174..1040 | 9..881 | 3775 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22930387..22930919 | 342..881 | 1995 | 95.9 | Plus |
| 2R | 25286936 | 2R | 22929865..22930073 | 9..216 | 845 | 94.7 | Plus |
| 2R | 25286936 | 2R | 22930186..22930319 | 210..343 | 655 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:25:38 has no hits.
FMO08012.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:20:44 Download gff for
FMO08012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30190-RA | 170..1042 | 1..881 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:48 Download gff for
FMO08012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42678-RH | 952..1824 | 1..881 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:39 Download gff for
FMO08012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42678-RK | 168..1040 | 1..881 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:39 Download gff for
FMO08012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22929859..22930073 | 1..216 | 93 | -> | Plus |
| 2R | 22930193..22930319 | 217..343 | 100 | -> | Plus |
| 2R | 22930389..22930919 | 344..881 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:48 Download gff for
FMO08012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18817382..18817596 | 1..216 | 93 | -> | Plus |
| arm_2R | 18817716..18817842 | 217..343 | 100 | -> | Plus |
| arm_2R | 18817912..18818442 | 344..881 | 95 | | Plus |
