FMO08017.5prime Sequence
848 bp (848 high quality bases) assembled on 2009-09-01
> FMO08017.5prime
CAGTCGACATGAAGACTGAGCTGCGTTCCTGCGCAGCGTGCGGGGAACCC
ATCTCGGATCGGTTCTTCCTGGAGGTCGGCGGCTGCTCCTGGCACGCCCA
CTGCCTCCGCTGCTGCATGTGCATGTGCCCCCTGGATCGCCAGCAGTCCT
GCTTCATCCGGGAGAGGCAGGTGTACTGCAAGGCCGACTACAGCAAAAAT
TTCGGCGCCAAGTGCTCCAAGTGCTGTCGCGGCATCTCCGCCTCGGATTG
GGTGCGTCGGGCACGGGAGCTGGTCTTCCATCTAGCCTGCTTTGCCTGCG
ACCAGTGTGGACGCCAGTTGTCCACCGGCGAGCAGTTCGCCCTCATGGAT
GACCGGGTGCTCTGCAAGGCTCATTATCTGGAGACGGTCGAGGGTGGCAC
CACATCGAGCGACGAGGGCTGTGATGGCGATGGTTATCACAAGAGCAAGA
CGAAACGGGTGCGCACCACCTTCACCGAGGAGCAGTTGCAAGTGCTGCAG
GCCAACTTCCAGATTGACAGTAATCCGGATGGCCAGGATCTGGAGCGGAT
CGCCTCGGTGACCGGTCTCAGCAAGCGTGTGACGCAAGTATGGTTCCAGA
ACTCGCGGGCGCGTCAGAAAAAACACATACATGCTGGTAAGAATAAAATA
CGCGAACCGGAAGGAAGCTCATTTGCGCGTCATATTAACCTGCAGTTAAC
GTATTCATTTCAGAAAACGCACAGAACCCAATGCATTTGAATGGCTCTAA
AGCGGGTCTATACCCGACTCATGAATCCTCTATGGATGAATTGTCGCAGA
CTCCAGTGTACACTGTATGCCCAGCGAGGTGCAAGCTTTCTAGACCAT
FMO08017.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:17:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Awh-RC | 2104 | CG1072-RC | 537..1361 | 9..831 | 4075 | 99.8 | Plus |
| Awh-RB | 2104 | CG1072-RB | 537..1361 | 9..831 | 4075 | 99.8 | Plus |
| Awh-RD | 2092 | CG1072-RD | 537..1349 | 9..831 | 3885 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:17:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3860189..3860423 | 414..648 | 1175 | 100 | Plus |
| 3L | 28110227 | 3L | 3859163..3859384 | 193..414 | 1095 | 99.5 | Plus |
| 3L | 28110227 | 3L | 3857940..3858123 | 13..196 | 920 | 100 | Plus |
| 3L | 28110227 | 3L | 3860636..3860761 | 649..773 | 580 | 99.2 | Plus |
| 3L | 28110227 | 3L | 3860890..3860949 | 773..831 | 250 | 98.3 | Plus |
Blast to na_te.dros performed 2014-11-28 22:17:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 640..734 | 78..168 | 132 | 63.2 | Plus |
FMO08017.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:18:48 Download gff for
FMO08017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Awh-RB | 524..1361 | 1..837 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:07 Download gff for
FMO08017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Awh-RB | 529..1366 | 1..837 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:27 Download gff for
FMO08017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Awh-RB | 529..1366 | 1..837 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:27 Download gff for
FMO08017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3859167..3859384 | 197..414 | 100 | -> | Plus |
| 3L | 3860190..3860423 | 415..648 | 100 | -> | Plus |
| 3L | 3860636..3860761 | 649..773 | 99 | -> | Plus |
| 3L | 3860891..3860954 | 774..837 | 93 | | Plus |
| 3L | 3857940..3858123 | 13..196 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:07 Download gff for
FMO08017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3857940..3858123 | 13..196 | 100 | -> | Plus |
| arm_3L | 3859167..3859384 | 197..414 | 100 | -> | Plus |
| arm_3L | 3860190..3860423 | 415..648 | 100 | -> | Plus |
| arm_3L | 3860636..3860761 | 649..773 | 99 | -> | Plus |
| arm_3L | 3860891..3860954 | 774..837 | 93 | | Plus |
