FMO08020.5prime Sequence
1135 bp (1003 high quality bases) assembled on 2009-09-01
> FMO08020.5prime
CAGTCGACATGTGGCTCGCTGTGTTGGCTCTGCTGGTTCTGCCACTGATC
ACATTGGTGTACTTTGAACGGAAGGCATCGCAACGGCGCCAACTGCTCAA
GGAATTCAATGGACCCACTCCGGTGCCCATTTTGGGCAACGCCAATCGGA
TTGGCAAAAATCCGGCAGAAATACTGTCTACATTCTTTGATTGGTGGTAC
GACTACGGAAAAGATAACTTTCTCTTCTGGATCGGATACAGTTCCCACAT
TGTGATGACCAATCCCAAGCAATTGGAGTACATTTTGAACAGTCAGCAAC
TGATACAAAAATCCACCATCTACGATCTACTGCATCCATGGCTGGGTCAT
GGTCTTCTAACGAGTTTTGGTAGTAAATGGCATAAACACCGCAAGATGAT
CACCCCATCCTTCCACTTCAACATCCTGCAGGACTTCCACGAGGTGATGA
ACGAGAACTCCGCAAAGTTTATGACTCAGTTGAAGAAGGCGAGCGCGGGA
GACACTATCATTGATTTCCAGGAGCATGCCAACTACCTTACTTTGGATGT
CATCTGTGACACGGCGATGGGAGTGCCCATCAATGCCATGGAACAGCGTG
ACTCCTCCATTGTCCAGGCATTCAGAGATATGTGTTACAATATAAATATG
AGAGCATTTCATCCATTTAAGCGCTCCAATCGCGTGTTTAGTTTAACACC
TGAGTTTTCAGCCTATCAAAAAACTTTGAAGACACTTCAAGATTTTACGT
ATGACATCATCGAAAAACGAGTATATGCTCTCCAGAATGGAGGATCTAAG
GAGGACCACGATCCATCGTTGCCACGAAAGAAGATGGCATTTTTAGACAC
CCTGCTATCCTCCACCATTGACGGTCGTCCTCTCACACGACAGGAGATCT
ACGAGGAGGTATCCACCTTTATGTTTGAAGGACACGACCACGACCACCTC
GGGAGTTATCGTTCTCGTATATCTTCTCTCGCGACATCCCGATGTCCAGA
GGAAATGTATCGGGAGCAATGTGAAGTCATGGGTCATGAATATGAAACAG
ATGGTCAGTTCCAGGAGAATAGCCAAAATGAAATATCTAGATCTTGTTTT
AATTAAGGAGGCGCACCGCGCTATCCCACGTTCAA
FMO08020.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp4e3-RA | 1805 | CG4105-RA | 52..1174 | 9..1133 | 5270 | 98.5 | Plus |
| Cyp4e2-RB | 1880 | CG2060-RB | 500..823 | 351..674 | 660 | 81.3 | Plus |
| Cyp4e2-RA | 1783 | CG2060-RA | 403..726 | 351..674 | 660 | 81.3 | Plus |
| Cyp4e2-RB | 1880 | CG2060-RB | 977..1183 | 828..1034 | 270 | 77.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9749150..9749501 | 628..277 | 1760 | 100 | Minus |
| 2L | 23513712 | 2L | 9748718..9749087 | 999..629 | 1710 | 99.2 | Minus |
| 2L | 23513712 | 2L | 9749861..9750020 | 168..9 | 800 | 100 | Minus |
| 2R | 25286936 | 2R | 8445606..8445883 | 351..628 | 595 | 80.9 | Plus |
| 2L | 23513712 | 2L | 9749560..9749672 | 278..166 | 565 | 100 | Minus |
| 2R | 25286936 | 2R | 8448160..8448417 | 336..593 | 480 | 79.1 | Plus |
| 2R | 25286936 | 2R | 8448726..8448836 | 828..938 | 210 | 79.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:36:41 has no hits.
FMO08020.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:18:46 Download gff for
FMO08020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4e3-RA | 1..1123 | 9..1133 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:10 Download gff for
FMO08020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4e3-RA | 52..1174 | 9..1133 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:22:59 Download gff for
FMO08020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4e3-RA | 52..1174 | 9..1133 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:22:59 Download gff for
FMO08020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9748718..9749087 | 629..999 | 99 | <- | Minus |
| 2L | 9749150..9749499 | 279..628 | 100 | <- | Minus |
| 2L | 9749560..9749669 | 169..278 | 100 | <- | Minus |
| 2L | 9749861..9750020 | 9..168 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:10 Download gff for
FMO08020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9748718..9749087 | 629..999 | 99 | <- | Minus |
| arm_2L | 9749150..9749499 | 279..628 | 100 | <- | Minus |
| arm_2L | 9749560..9749669 | 169..278 | 100 | <- | Minus |
| arm_2L | 9749861..9750020 | 9..168 | 100 | | Minus |
